PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676765640
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family DBB
Protein Properties Length: 159aa    MW: 17446.5 Da    PI: 5.2394
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676765640genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.73.7e-06446541
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                C+ +e+ e++  C +++  lC+ C ++ H+       H +vp
  676765640  4 QCEVCEKAEAEVLCCSDEAVLCKPCDTNVHEAnklfqrHHRVP 46
               7*****************************7788999977776 PP
2zf-B_box31.24.5e-105895338
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
               ++ C+ ++e +  +fC +++ llC+dC  ++H g  H+
  676765640 58 APLCDICQERKGYFFCLEDRALLCNDCDGAIHIGnsHQ 95
               689******99*********************444587 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.722147IPR000315B-box-type zinc finger
CDDcd000211.83E-6347No hitNo description
SMARTSM003365.5E-8447IPR000315B-box-type zinc finger
SMARTSM003363.1E-115699IPR000315B-box-type zinc finger
PROSITE profilePS501199.25699IPR000315B-box-type zinc finger
PfamPF006432.8E-85895IPR000315B-box-type zinc finger
CDDcd000212.21E-75999No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MKIQCEVCEK AEAEVLCCSD EAVLCKPCDT NVHEANKLFQ RHHRVPLKKT ASPTSSAAPL  60
CDICQERKGY FFCLEDRALL CNDCDGAIHI GNSHQRFLLS GVQASDQSLT ENSGCSTSFS  120
SEPYQIHSKA SLVTQYSSEE TEARNSGETD KNPSVILSP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250|UniProtKB:Q9SJU5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676765640
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1229161e-131AY122916.1 Arabidopsis thaliana putative zinc-finger protein (At4g10240) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013654798.11e-95B-box zinc finger protein 23-like
SwissprotO826172e-88BBX23_ARATH; B-box zinc finger protein 23
TrEMBLA0A3P5Y0G43e-95A0A3P5Y0G4_BRACM; Uncharacterized protein
STRINGBostr.25463s0295.1.p5e-97(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125022430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10240.17e-91DBB family protein
Publications ? help Back to Top
  1. Zhang X, et al.
    A PIF1/PIF3-HY5-BBX23 Transcription Factor Cascade Affects Photomorphogenesis.
    Plant Physiol., 2017. 174(4): p. 2487-2500
    [PMID:28687557]