PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676765752

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Protein Properties

Length: 213aa MW: 24403.4 Da PI: 5.4009

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676765752	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.6	8.4e-17	30	120	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ffkv +ps + ++ ++++p +f++ g + + s +tle++ g + ++k+ ++ ++++++++GW+eF++a+ + eg f+ F+++g+s+f +v++f+ 676765752 30 FFKVVLPSTMKRK-MMMIPTRFVKLQG-S-TLSEFVTLETPVGFKRSIKV--NRIGEEIWFQDGWSEFADAHSISEGHFLFFEYKGNSSF--RVMIFN 120 7888877777666.5******5555.4.48889***********..*********************************999..888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.51E-23	23	124	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.7E-21	24	124	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.97E-15	28	120	No hit	No description
PROSITE profile	PS50863	12.125	29	122	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.0E-15	30	120	IPR003340	B3 DNA binding domain
SMART	SM01019	3.1E-17	30	122	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MVTTRQTKAR VNKASHRWPH SEPDSSVKKF FKVVLPSTMK RKMMMIPTRF VKLQGSTLSE 60 FVTLETPVGF KRSIKVNRIG EEIWFQDGWS EFADAHSISE GHFLFFEYKG NSSFRVMIFN 120 VSACEIEYPL DEIHISDSDD EVIDVTDEGF LGTQGTRGND QSVNGGDSEH NPNKRPRDEE 180 FEKILNDLDG INSIKALGEE EEAKRVFRGI QFF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676765752

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240102	0.0	AC240102.1 Sisymbrium irio clone SIR-40E09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013744123.1	1e-120	B3 domain-containing protein At3g18960
Swissprot	Q84R27	1e-100	Y3896_ARATH; B3 domain-containing protein At3g18960
TrEMBL	A0A3P6F1G9	1e-114	A0A3P6F1G9_BRAOL; Uncharacterized protein
STRING	Bra022374.1-P	1e-109	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1591	25	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18960.1	1e-102	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]