PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676766034
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 249aa    MW: 28368.9 Da    PI: 9.526
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676766034genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1652.6e-51141381128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeelvv+yLk+kv +++l++ ++i+++d+++++PwdLp +    eke yfFs+r+ ky++g+r+nrat sgyWkatg dk+v+++ +++ 
  676766034  14 LPPGFRFHPTDEELVVQYLKRKVCSSPLPA-SIIPDFDVCRADPWDLPGN---LEKERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKRVVTSrGNQI 109
                79****************************.89***************44...4789********************************99998857777 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vglkktLvfykg+ p+g++tdW+mheyrl
  676766034 110 VGLKKTLVFYKGKPPHGSRTDWIMHEYRL 138
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-6010160IPR003441NAC domain
PROSITE profilePS5100558.55814160IPR003441NAC domain
PfamPF023652.8E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDKVKLVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVCSSP LPASIIPDFD VCRADPWDLP  60
GNLEKERYFF STREAKYPNG NRSNRATGSG YWKATGIDKR VVTSRGNQIV GLKKTLVFYK  120
GKPPHGSRTD WIMHEYRLSS SPPSSMGPTQ NWVLCRIFLK KRAGNKSDDD EGDNRNIRYN  180
NDQLEIFTTS QTEDKTKPIF FDFMRKERTT DLNLLPSSPS SDHASSGLTT EIFSSDEETS  240
SCNSFTRNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-521216618174NAC domain-containing protein 19
3swm_B5e-521216618174NAC domain-containing protein 19
3swm_C5e-521216618174NAC domain-containing protein 19
3swm_D5e-521216618174NAC domain-containing protein 19
3swp_A5e-521216618174NAC domain-containing protein 19
3swp_B5e-521216618174NAC domain-containing protein 19
3swp_C5e-521216618174NAC domain-containing protein 19
3swp_D5e-521216618174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676766034
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9578370.0JF957837.1 Brassica napus NAC5 mRNA, complete cds.
GenBankKC9667590.0KC966759.1 Brassica napus NAC transcription factor 83 (NAC83.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608832.11e-168PREDICTED: NAC domain-containing protein 83
RefseqXP_013667953.11e-168NAC domain-containing protein 83
SwissprotQ9FY931e-151NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A078F9L01e-167A0A078F9L0_BRANA; BnaC09g43890D protein
TrEMBLA0A0D3EFU81e-167A0A0D3EFU8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E8721e-167A0A3P6E872_BRAOL; Uncharacterized protein
STRINGBo9g168950.11e-167(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-150NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]