PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676766542
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 317aa    MW: 36145.6 Da    PI: 7.8176
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676766542genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1721.8e-5381361128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                +ppGfrFhPtdeel+++yLkkk++ +k+e+ evi+evd++k+ePwdL+   ++ +  ++ewyfFs++dkky+tg+r+nrat+sg+Wkatg+dk + +   
  676766542   8 VPPGFRFHPTDEELLHYYLKKKISYEKFEM-EVIREVDLNKIEPWDLQDrcRIGStPQNEWYFFSHKDKKYPTGSRTNRATHSGFWKATGRDKCIRN-CY 105
                69****************************.99**************952433332556*************************************9.99 PP

        NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                +++g++ktLvfykgrap+g+ktdW+mheyr+
  676766542 106 KKIGMRKTLVFYKGRAPHGQKTDWIMHEYRI 136
                9****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-587156IPR003441NAC domain
PROSITE profilePS5100557.6228156IPR003441NAC domain
PfamPF023654.0E-289136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSSLNGGVPP GFRFHPTDEE LLHYYLKKKI SYEKFEMEVI REVDLNKIEP WDLQDRCRIG  60
STPQNEWYFF SHKDKKYPTG SRTNRATHSG FWKATGRDKC IRNCYKKIGM RKTLVFYKGR  120
APHGQKTDWI MHEYRIEDSN DEPSEDGWVV CRVFKKKNLF KVGNDAGANI NNNRLEAHSF  180
VRRESPCHGI TAFELNKPGE IGLHQYQPPM FQSQAILASS HHNKPLSVGY DYSLALLPRE  240
SEGEGIQYQQ ACEPSGVEVG TCKSVGEWGM ATCHLGNHED SSRAMRFEDE GNNNSSSVQA  300
PSNLLSLRGE NGFLGLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-50815817167NO APICAL MERISTEM PROTEIN
1ut4_B3e-50815817167NO APICAL MERISTEM PROTEIN
1ut7_A3e-50815817167NO APICAL MERISTEM PROTEIN
1ut7_B3e-50815817167NO APICAL MERISTEM PROTEIN
3swm_A3e-50815820170NAC domain-containing protein 19
3swm_B3e-50815820170NAC domain-containing protein 19
3swm_C3e-50815820170NAC domain-containing protein 19
3swm_D3e-50815820170NAC domain-containing protein 19
3swp_A3e-50815820170NAC domain-containing protein 19
3swp_B3e-50815820170NAC domain-containing protein 19
3swp_C3e-50815820170NAC domain-containing protein 19
3swp_D3e-50815820170NAC domain-containing protein 19
4dul_A3e-50815817167NAC domain-containing protein 19
4dul_B3e-50815817167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676766542
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415110.10.0protein BEARSKIN1
SwissprotQ9C8780.0BRN1_ARATH; Protein BEARSKIN1
TrEMBLV4L1400.0V4L140_EUTSA; Uncharacterized protein
STRINGXP_006415110.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52132648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33280.10.0NAC domain containing protein 15
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]