PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676766620
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family LSD
Protein Properties Length: 156aa    MW: 16036.6 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676766620genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1468.5e-153963125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               C+gCr+lL+YP GA+sV+Ca+C++V
  676766620 39 CSGCRNLLMYPVGATSVCCAVCNAV 63
               ************************9 PP
2zf-LSD146.65.4e-1578102125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                CggC+tlL+Y rGA+sV+C++C+tV
  676766620  78 CGGCHTLLMYIRGATSVQCSCCHTV 102
                ************************9 PP
3zf-LSD138.22.4e-12116140125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                Cg+Cr lL+Y +GA+sV+Ca+C +V
  676766620 116 CGSCRMLLMYQYGARSVKCAVCSFV 140
                **********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.8E-143666IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-113963IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.90.10.100.00153137No hitNo description
TIGRFAMsTIGR010539.8E-1575104IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-1278102IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.3E-12113142IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-11116140IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MPVPLAPYPT PPTPALAPSY TSPPPPANGS TGGQSQLVCS GCRNLLMYPV GATSVCCAVC  60
NAVTAVPPPG TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLALEANQ VAHVNCGSCR  120
MLLMYQYGAR SVKCAVCSFV TSVGGSTSTT DLKFNN
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676766620
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1932951e-175AB193295.1 Brassica rapa BrLOL1 mRNA for LSD-One-Like 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638467.14e-99PREDICTED: protein LOL1
SwissprotQ93ZB11e-87LOL1_ARATH; Protein LOL1
TrEMBLA0A0D3CGN59e-98A0A0D3CGN5_BRAOL; Uncharacterized protein
STRINGBo5g087050.12e-98(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.38e-63lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]