PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676767246
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TALE
Protein Properties Length: 392aa    MW: 44305.8 Da    PI: 6.7656
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676767246genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.9e-093183522155
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                k +yps++++  LA+++gL+++q+ +WF N+R ++
  676767246 318 KWPYPSEQQKLALAESTGLDQKQINNWFINQRKRH 352
                569*****************************885 PP
2ELK414e-14272293122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELK qLlrKYsgyLgsLkqEF+
  676767246 272 ELKGQLLRKYSGYLGSLKQEFM 293
                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.9E-18129173IPR005540KNOX1
PfamPF037901.5E-20131169IPR005540KNOX1
SMARTSM012561.1E-26180231IPR005541KNOX2
PfamPF037917.8E-21184229IPR005541KNOX2
SMARTSM011882.8E-8272293IPR005539ELK domain
PfamPF037896.6E-11272293IPR005539ELK domain
PROSITE profilePS5121311.174272292IPR005539ELK domain
PROSITE profilePS5007113.151292355IPR001356Homeobox domain
SMARTSM003895.3E-13294359IPR001356Homeobox domain
SuperFamilySSF466891.54E-19294370IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-28297357IPR009057Homeodomain-like
CDDcd000863.18E-12304356No hitNo description
PfamPF059203.5E-17312351IPR008422Homeobox KN domain
PROSITE patternPS000270330353IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MESGSNSTSC PMAFAGDNSD GPMCPMMMMM MPIMTSHQHQ QHHHGHDHQH QHQQQQQHDG  60
YAYQSHHQQS SSLFLQSLAP PPSQETKNKV AFSSSPSSCA PAYSLMEIHH QNDLLVGGLN  120
PCSSSPSSAS VKAKIMAHPH YHRLLLAYVN CQKVGAPPEV QARLEETCSS AAAAAASMGP  180
TGSLGEDPGL DQFMEAYCEM LVKYEQELSK PFKEAMVFLQ RVECQFKSLS LSSPSSFSGY  240
GETAIERNNN GSSEEEVDMN NEFIDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK  300
LPKEARQQLL DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ  360
FVVMDATHPH HYFMDNVLGN PFPMDHISST ML
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287296LKQEFMKKRK
2293297KKRKK
Functional Description ? help Back to Top
Source Description
UniProtRequired for shoot apical meristem formation during embryogenesis. Probably binds to the DNA sequence 5'-TGAC-3' (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676767246
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU4805850.0GU480585.1 Brassica rapa SHOOT MERISTEMLESS (STM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302988.10.0homeobox protein SHOOT MERISTEMLESS
SwissprotQ9M6D90.0STM_BRAOL; Homeobox protein SHOOT MERISTEMLESS
TrEMBLD4NZH60.0D4NZH6_BRANA; SHOOT MERISTEMLESS
STRINGBra027050.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64732644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.10.0KNOX/ELK homeobox transcription factor