PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676767426
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GATA
Protein Properties Length: 180aa    MW: 20579.1 Da    PI: 7.6428
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676767426genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.7e-18104138135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                Cs+C t +TplWR gp g+ tLCnaCG++y+k gl
  676767426 104 CSHCETRNTPLWRAGPKGSGTLCNACGMRYKKGGL 138
                ********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.8E-1698152IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.74398138IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-14100159No hitNo description
Gene3DG3DSA:3.30.50.109.1E-16102138IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.03E-18103152No hitNo description
PfamPF003202.4E-16104138IPR000679Zinc finger, GATA-type
PROSITE patternPS003440104129IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MTHDDVVVHE EEEDLQAAIQ KLEIPYKELE QNAFDSTDDG LDGLKEFIED PDLLLYDLQE  60
SEDPTSIHGR SLVPKRPRNK QVRRKRLHFN SASSLIGHFT NKICSHCETR NTPLWRAGPK  120
GSGTLCNACG MRYKKGGLLP EYRPASSPGF KPNVHSNFHR KVMEIRREKN PPNNSFGFQH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00391DAPTransfer from AT3G45170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676767426
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419066.14e-60GATA transcription factor 14
RefseqXP_024009703.14e-60GATA transcription factor 14
SwissprotQ9M1U25e-60GAT14_ARATH; GATA transcription factor 14
TrEMBLA0A087HQI59e-62A0A087HQI5_ARAAL; Uncharacterized protein
STRINGA0A087HQI52e-62(Arabis alpina)
STRINGBostr.21132s0007.1.p2e-62(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM163681113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45170.14e-59GATA transcription factor 14