PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676767842
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NF-YC
Protein Properties Length: 234aa    MW: 26618.7 Da    PI: 7.1138
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676767842genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1375.4e-4356156298
      NF-YC   2 lksfwekqiekatdfk....nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                lk+fw +q ++  +f     +++lPl+r++kilk+d++v+mis +aP+l+skace+fileltlr+w+h+++++r+t++++d+++av++++++ fl+d vp
  676767842  56 LKVFWDNQWDELRNFTgfnrQNNLPLTRVRKILKSDPQVRMISWDAPALVSKACEYFILELTLRAWMHTQSCTRQTIRRCDVFQAVKNSETYGFLIDLVP 155
                89******888877754435789****************************************************************************9 PP

      NF-YC  98 r 98 
                 
  676767842 156 F 156
                7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.02E-2376156IPR009072Histone-fold
PfamPF008081.0E-1578141IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.3E-2779155IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MKRPIVTSSS LFPNASVKSS RIRMEPVALE SHTVMLMPYN PAMNNIDAVS SLEAVLKVFW  60
DNQWDELRNF TGFNRQNNLP LTRVRKILKS DPQVRMISWD APALVSKACE YFILELTLRA  120
WMHTQSCTRQ TIRRCDVFQA VKNSETYGFL IDLVPFGPHC AIHQGVLEHA EPDKVLTPAK  180
MILPDMNVPI DLNQIEQENV IAKPFINRKG FDLNSISSEH DSDGNQGIVE KVQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-2562155294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676767842
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405799.21e-123nuclear transcription factor Y subunit C-10 isoform X2
SwissprotQ58CM83e-83NFYCA_ARATH; Nuclear transcription factor Y subunit C-10
TrEMBLV4LXI01e-117V4LXI0_EUTSA; Uncharacterized protein
STRINGXP_006405799.11e-117(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM164221112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38140.11e-85nuclear factor Y, subunit C12
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]