PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676768784
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 395aa    MW: 41447.7 Da    PI: 8.1329
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676768784genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.4e-0987110125
                --S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                +kt+lC+ f++ GtC+y  +C+FaH
  676768784  87 FKTKLCCKFRA-GTCPYVTNCNFAH 110
                69*********.************* PP
2zf-CCCH17.66.6e-06174197326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 + C+ f+    C+yG++C+F+H+
  676768784 174 GRHCKKFYTEEGCPYGESCTFMHD 197
                5669*****9*************7 PP
3zf-CCCH42.51.1e-13272297126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt++C+ +  tG+C++G++C+FaHg
  676768784 272 WKTRICNKWEITGYCPFGAKCHFAHG 297
                8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.16E-784117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-1384119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.67186113IPR000571Zinc finger, CCCH-type
SMARTSM003560.003986112IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-787110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-6171198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.112171199IPR000571Zinc finger, CCCH-type
SMARTSM003560.55171198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-8172198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-10267302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-17267301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178271299IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9271298IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-11272297IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MSNHHHRRDS GGDVVHVIPT NNPPPENWFP NLGDTAVWAT EDDYNRVWAV NPDNSSGDNG  60
PPNKKTRGSP SSSSASNRTK AIGKMFFKTK LCCKFRAGTC PYVTNCNFAH TVEELRRPPP  120
NWQEIVAAHE EERSGTGTPT TATNTVAVAA EQREEFQIPS LVSSTAESGR SFKGRHCKKF  180
YTEEGCPYGE SCTFMHDEAS RNRESVAISL GPGGYGGGGG GSGSAGGSGA GVGVGVVGGG  240
GNSNVVVLGG GGGGGGGNGS GSGIHIVKPS NWKTRICNKW EITGYCPFGA KCHFAHGAAE  300
LHRFGGGLVE GEGKDGVSPN QDMKQTGPNT KGHSDTTPLL SPGVPHHADA GYHSGVALQR  360
ASSAVTQKPG IRTHQKWKGP AKISRIYGDW IDDIE
Cis-element ? help Back to Top
SourceLink
PlantRegMap676768784
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180131e-143AK118013.1 Arabidopsis thaliana At1g32360 mRNA for putative RING-H2 zinc finger protein ATL6, complete cds, clone: RAFL19-22-M03.
GenBankAY0564071e-143AY056407.1 Arabidopsis thaliana At1g32359/F27G20.10 mRNA, complete cds.
GenBankAY0817101e-143AY081710.1 Arabidopsis thaliana At1g32359/F27G20.10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461055.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
SwissprotQ9LQM30.0C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLD7KHJ60.0D7KHJ6_ARALL; Zinc finger (CCCH-type) family protein
STRINGXP_010461055.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-118C3H family protein