PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676769324
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 268aa    MW: 31022.8 Da    PI: 9.5526
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676769324genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.9e-131764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l+  +  +G  +W+t++   g+ R +k+c++rw +yl
        676769324 17 KGLWSPEEDQKLKSFILSHGHACWTTVPILAGLQRNGKSCRLRWINYL 64
                     678*******************************************97 PP
2Myb_DNA-binding54.72.3e-1770115148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE+e ++ ++  lG++ W++Ia++++ gRt++++k++w++yl
        676769324  70 RGTFSAEEEETILTLHSSLGNK-WSRIAKYLP-GRTDNEIKNYWHSYL 115
                      899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.5341264IPR017930Myb domain
SuperFamilySSF466891.2E-2714111IPR009057Homeodomain-like
SMARTSM007176.7E-91666IPR001005SANT/Myb domain
PfamPF002491.0E-111764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-201871IPR009057Homeodomain-like
CDDcd001672.87E-72064No hitNo description
PROSITE profilePS5129425.37565119IPR017930Myb domain
SMARTSM007172.3E-1669117IPR001005SANT/Myb domain
PfamPF002494.3E-1670115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-2672118IPR009057Homeodomain-like
CDDcd001673.17E-1172115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGKMTKSGER PKQRQRKGLW SPEEDQKLKS FILSHGHACW TTVPILAGLQ RNGKSCRLRW  60
INYLRPGLKR GTFSAEEEET ILTLHSSLGN KWSRIAKYLP GRTDNEIKNY WHSYLKKRWL  120
KSQPQLKTQR SNLTESSSSP LSCGKRNLET LDHVISFQKL SEKPSSSASQ GSKKNMMNNN  180
NNNLPKLFFS EWISSADPHI DYSSRFTDSM QTNQTQDQID EELMMINNSY SSLENDDVML  240
RTAFQQPDHD YANYYSGDFF INSDVTYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24171187107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676769324
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196360.0AY519636.1 Arabidopsis thaliana MYB transcription factor (At5g52260) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681885.11e-167transcription factor LAF1-like
RefseqXP_013683361.11e-167transcription factor LAF1-like
SwissprotQ9M0K44e-94LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A3P6A5X11e-165A0A3P6A5X1_BRACM; Uncharacterized protein
TrEMBLM4EK121e-165M4EK12_BRARP; Uncharacterized protein
STRINGBra029129.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-146myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]