PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

67677

Common Name

SELMODRAFT_67677

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NAC

Protein Properties

Length: 166aa MW: 19460.4 Da PI: 10.1562

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
67677	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.2	6.8e-49	11	137	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkk 104 pGfrFhPtdeelv +yL++k+++k +++ +vi+ +diy+++Pw+Lpk +e+ wyfF+ rd+k +++ r+nr+tksg+Wkatg d+++ + +++ vglkk 67677 11 LPGFRFHPTDEELVGFYLRRKIQDKAFPF-QVITPLDIYNYDPWELPKLSVCGENAWYFFCLRDHKFRNSLRPNRITKSGFWKATGPDRPISTVeTSSCVGLKK 113 69*************************.99***********75556899********************************98756777* PP NAM 105 tLvfykgrapkgektdWvmheyrl 128 tLvfykgra k++kt+Wvmhe+rl 67677 114 TLVFYKGRATKATKTEWVMHEFRL 137 ********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.49E-55	9	161	IPR003441	NAC domain
PROSITE profile	PS51005	53.607	10	161	IPR003441	NAC domain
Pfam	PF02365	8.5E-28	12	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
KMRESVAEVI LPGFRFHPTD EELVGFYLRR KIQDKAFPFQ VITPLDIYNY DPWELPKLSV 60 CGENAWYFFC LRDHKFRNSL RPNRITKSGF WKATGPDRPI STVETSSCVG LKKTLVFYKG 120 RATKATKTEW VMHEFRLPTI GSSAQGSCEQ ESWSVCRIFR KRWSPR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-49	12	166	19	170	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-49	12	166	19	170	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-49	12	166	19	170	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-49	12	166	19	170	NO APICAL MERISTEM PROTEIN
3swm_A	3e-49	12	164	22	171	NAC domain-containing protein 19
3swm_B	3e-49	12	164	22	171	NAC domain-containing protein 19
3swm_C	3e-49	12	164	22	171	NAC domain-containing protein 19
3swm_D	3e-49	12	164	22	171	NAC domain-containing protein 19
3swp_A	3e-49	12	164	22	171	NAC domain-containing protein 19
3swp_B	3e-49	12	164	22	171	NAC domain-containing protein 19
3swp_C	3e-49	12	164	22	171	NAC domain-containing protein 19
3swp_D	3e-49	12	164	22	171	NAC domain-containing protein 19
4dul_A	3e-49	12	166	19	170	NAC domain-containing protein 19
4dul_B	3e-49	12	166	19	170	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002961966.2	1e-122	putative NAC domain-containing protein 94 isoform X1
Refseq	XP_002971119.2	1e-122	putative NAC domain-containing protein 94 isoform X1
Refseq	XP_024531839.1	1e-122	putative NAC domain-containing protein 94 isoform X1
Swissprot	Q9FIW5	4e-70	NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBL	D8RJG9	1e-120	D8RJG9_SELML; Uncharacterized protein (Fragment)
STRING	EFJ27717	1e-121	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	2e-72	NAC domain containing protein 94

Link Out ? help Back to Top
Phytozome	67677
Entrez Gene	9642542

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]