PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676770294
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 290aa    MW: 31210.8 Da    PI: 7.8252
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676770294genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065121143123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ C+++F++   L  H  +H
  676770294 121 YECKTCNRTFPSFQALGGHRASH 143
                99**********99999998887 PP
2zf-C2H213.30.00024197219123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++Cg  F++   L  H+r+H
  676770294 197 HECSICGSEFTSGQALGGHMRRH 219
                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.6E-13120145IPR007087Zinc finger, C2H2
SuperFamilySSF576671.42E-8120143No hitNo description
PROSITE profilePS5015710.554121148IPR007087Zinc finger, C2H2
SMARTSM003550.052121143IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SuperFamilySSF576671.42E-8192219No hitNo description
Gene3DG3DSA:3.30.160.600.001195219IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-11196220IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.055197224IPR007087Zinc finger, C2H2
SMARTSM003550.019197219IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MMGQDHEVGS DQTQIIKGKR TKRQRSSSST FLVATATTVT STSSSAGGDG GGRTASDEYN  60
SAVSSPVTTT DCTEEEEDMA ICLIMLARGA APSPDLKSSR KTDKILHQKI SLTENSSFYV  120
YECKTCNRTF PSFQALGGHR ASHKKPRASI DEKAKVPLTQ LKSSASEEGQ NSHFKVSGSA  180
LASQASNIII SKANKVHECS ICGSEFTSGQ ALGGHMRRHR TANTAVSPVA TAGVSRNSTE  240
DEIENLSRSM EQRKYLPLDL NLPAPEDDLR ESKFQGIVFS ATPALIDCHY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676770294
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004277.11e-172zinc finger protein ZAT5
SwissprotQ681X41e-158ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A397YKN81e-170A0A397YKN8_BRACM; Uncharacterized protein
TrEMBLV4M4X41e-169V4M4X4_EUTSA; Uncharacterized protein
STRINGXP_006409841.11e-170(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-144C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]