PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676770410
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 168aa    MW: 18534.2 Da    PI: 9.4815
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676770410genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF529.2e-171563149
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               k++e++  r vtfsk ++gi+KK +E+ +LC++e+a ++fs++gk y++
  676770410 15 KKVEDDGDRMVTFSKCKAGIFKKINEIATLCNVEAAFLVFSKSGKPYTF 63
               57899999****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.866767IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-22766IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-22878IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-15929IPR002100Transcription factor, MADS-box
PfamPF003199.5E-201663IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-152944IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-154465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MLMKQTKGKQ KIEMKKVEDD GDRMVTFSKC KAGIFKKINE IATLCNVEAA FLVFSKSGKP  60
YTFGHPSVNE VFGRLKSSLR HEPSARDNTN TGLLVEADKR QRIEDLMKKY DDLVEELQME  120
KEKEKKFKGI ENLSRMALKR LGNDDGGSSA GLAGHGHCGG PGGSAAEP
Cis-element ? help Back to Top
SourceLink
PlantRegMap676770410
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408223.12e-53agamous-like MADS-box protein AGL62
TrEMBLV4NSM74e-52V4NSM7_EUTSA; Uncharacterized protein
STRINGXP_006408223.17e-53(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.14e-41AGAMOUS-like 57