PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676770606
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 209aa    MW: 23664.7 Da    PI: 9.9458
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676770606genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-1970125156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rrk+ ++tkeq + Lee F +n++++ ++++eLA+ l+L++rqV vWFqNrRa+ k
  676770606  70 RRKKLRLTKEQSHLLEESFIQNHTLTPKQKQELATFLKLSQRQVEVWFQNRRARSK 125
                79999*************************************************98 PP
2HD-ZIP_I/II110.71e-3571159189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rl+keq++lLEesF ++++L+p++K+ela+ L+l++rqv+vWFqnrRAR k+k++E+++e+Lkr++ +lke+n+rL++eveeLr+
    676770606  71 RKKLRLTKEQSHLLEESFIQNHTLTPKQKQELATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQTEVEELRA 159
                  69*************************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.92E-2056126IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-1960125IPR009057Homeodomain-like
PROSITE profilePS5007118.30167127IPR001356Homeobox domain
SMARTSM003893.5E-1869131IPR001356Homeobox domain
CDDcd000868.46E-1770128No hitNo description
PfamPF000468.6E-1770125IPR001356Homeobox domain
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
SMARTSM003409.2E-15127170IPR003106Leucine zipper, homeobox-associated
PfamPF021832.9E-9127161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAVSPNSSSL ELTISIPSFS PSHSLPSSGD HMVRDLDINK TPKTEKDRAG IMIGATPHVN  60
ENDGNSGGRR RKKLRLTKEQ SHLLEESFIQ NHTLTPKQKQ ELATFLKLSQ RQVEVWFQNR  120
RARSKLKHTE MECEYLKRWF GSLKEQNRRL QTEVEELRAR KPVSASVLTM CPRCERVTDA  180
ADNESNAVEE GTAPRSQSRM TISSSSSLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16775GRRRKKLRL
26874RRRKKLR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00226DAPTransfer from AT1G70920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676770606
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105759.11e-124PREDICTED: homeobox-leucine zipper protein ATHB-X
SwissprotQ8GXM71e-107ATHBX_ARATH; Homeobox-leucine zipper protein ATHB-X
TrEMBLA0A1J3JI871e-123A0A1J3JI87_NOCCA; Homeobox-leucine zipper protein ATHB-X
STRINGBra016174.1-P1e-123(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133801624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70920.17e-98homeobox-leucine zipper protein 18
Publications ? help Back to Top
  1. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]