PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676770646
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Trihelix
Protein Properties Length: 239aa    MW: 27276.4 Da    PI: 8.8072
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676770646genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.81.4e-1819106273
   trihelix   2 WtkqevlaLiearremeerlrrgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                Wt +e+++Liea++ ++er  r++                 ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r +
  676770646  19 WTLNETMVLIEAKKMDDERRMRRSiglpaseqsqsssgnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRVE 106
                *************977776666544555556666666666999*****************************************9843 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.8531191IPR017877Myb-like domain
PfamPF138371.2E-1318106No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MADQSGGLVM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPASEQ SQSSSGNKPA  60
ELRWKWIEDY CWRKGCMRSQ NQCNDKWDNL MRDYKKVREY ERRRVESSFA SESSSSAAAE  120
TGSYWKMEKS ERKERNLPRG GGGGNVETEE GETVVAAALS RSASVIANAI RESEERQDRR  180
HQEVMSLQER RLKIEESNVE MNREGMNGLV EAINKLASSI FALASSSSRH NNQHQGGPS
Cis-element ? help Back to Top
SourceLink
PlantRegMap676770646
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894441e-152AC189444.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070J23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489614.11e-81PREDICTED: protein SCARECROW-like isoform X1
RefseqXP_018489615.18e-82PREDICTED: protein SCARECROW-like isoform X2
TrEMBLA0A087HS012e-83A0A087HS01_ARAAL; Uncharacterized protein
STRINGA0A087HS013e-84(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.13e-58Trihelix family protein