PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676771034
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 343aa    MW: 38884.2 Da    PI: 5.4763
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676771034genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.52.3e-48221472128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                 pGf+F+Ptd el+++yLk+kv+g + ++ e+i+evdiy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+s ++e++
  676771034  22 FPGFKFSPTDIELISYYLKRKVDGLERSV-EIIAEVDIYNFEPWDLPdKSIVKSDNEWFFFCARGKKYPHGSQNRRATKLGYWKATGKERNVKS-GSEVI 119
                59************************999.89***************778888999**************************************.9**** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                g+k+tLvf+ grapkg +t+W+mhey +
  676771034 120 GTKRTLVFHIGRAPKGGRTEWLMHEYCM 147
                **************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-5312162IPR003441NAC domain
PROSITE profilePS5100551.15921163IPR003441NAC domain
PfamPF023652.2E-2423146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MATEAVEVTR DTSLSMSVTT AFPGFKFSPT DIELISYYLK RKVDGLERSV EIIAEVDIYN  60
FEPWDLPDKS IVKSDNEWFF FCARGKKYPH GSQNRRATKL GYWKATGKER NVKSGSEVIG  120
TKRTLVFHIG RAPKGGRTEW LMHEYCMIGV SLDTLVICRL RRNTEFQGAT IQKAPPQPSL  180
LPDKHANSQN ETVSESIRGW ENMVDFYLSS ESGHDLLSEI AESSHSSQNP QNPSEEDFYA  240
DILRDDIVKL DDPTVSGNTL IDVPRLQSEF TTTRVLPLPS MVDKQMQSLL QKLPLQNDIG  300
EENNISMSNC FIGIYSIKSI NRARWDVVAW VLVMIAVLVF YLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-432316322168NAC domain-containing protein 19
3swm_B7e-432316322168NAC domain-containing protein 19
3swm_C7e-432316322168NAC domain-containing protein 19
3swm_D7e-432316322168NAC domain-containing protein 19
3swp_A7e-432316322168NAC domain-containing protein 19
3swp_B7e-432316322168NAC domain-containing protein 19
3swp_C7e-432316322168NAC domain-containing protein 19
3swp_D7e-432316322168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:24625790}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676771034
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By glucose (PubMed:24625790). Induced by salt, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:24625790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747630.0KF974763.1 Brassica napus NAC transcription factor 60-1 (NAC60-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639422.10.0PREDICTED: NAC domain-containing protein 60 isoform X1
SwissprotQ9LXL90.0NAC60_ARATH; NAC domain-containing protein 60
TrEMBLA0A078G4K10.0A0A078G4K1_BRANA; BnaC01g23890D protein
TrEMBLA0A0D3A8I00.0A0A0D3A8I0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FDY00.0A0A3P6FDY0_BRAOL; Uncharacterized protein
STRINGBo1g063720.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.10.0NAC domain containing protein 60
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]