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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
676771750 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 286aa MW: 32179.7 Da PI: 9.7012 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 676771750 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 301.6 | 2.9e-92 | 1 | 286 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki.....................rernlalsekkaavaerd........maflqrdkalaern 71
m++dg +rn+gyyep+ +++ lglql+ si +r++k+ s+ + +rd m++ ++l++
676771750 1 MEEDGLSNRNWGYYEPS-QFRPSLGLQLIPSIVDRNEKPflcpqnpnfiasnigfrggssS-----SSNINVMSFPRDctvsdapfMSY----SWLNQ-- 88
9***************9.*********************9977555555544444222222.....22222222444466666566666....88888.. PP
GAGA_bind 72 kalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkks 171
+rd+k++++ ++ + +++p v + t+ + +q + + +++ + ++e+ +++++ ++r +pk+kk++k+k+ s
676771750 89 ----HRDSKFFNNSPNLSN--HHHPLLVPTPCRTT-QQPMQL------LQIP----------KPE-VGDVDESLKRRHCGVGERDCTPKAKKERKVKD-S 163
....899999999884443..55544333222222.222222......2222..........233.3457889999*******************999.2 PP
GAGA_bind 172 ekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLek 271
+ +++++++ kks+++v+ngvs+D+s lPvPvCsCtG ++ CY+WG+GGWqSaCCtt++S+yPLP+stkrrg+RiagrKmSqgaf+k+Lek
676771750 164 -------SVPRVQRERSPLKKSVEMVINGVSMDISCLPVPVCSCTGFSQPCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGTRIAGRKMSQGAFRKVLEK 256
.......2334444566799******************************************************************************** PP
GAGA_bind 272 LaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
L+++G+d+sn +DLk+hWAkHGtnkfvtir
676771750 257 LSSDGFDFSNSIDLKSHWAKHGTNKFVTIR 286
*****************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 286 aa
Download sequence Send
to blast |
MEEDGLSNRN WGYYEPSQFR PSLGLQLIPS IVDRNEKPFL CPQNPNFIAS NIGFRGGSSS 60
SSNINVMSFP RDCTVSDAPF MSYSWLNQHR DSKFFNNSPN LSNHHHPLLV PTPCRTTQQP 120
MQLLQIPKPE VGDVDESLKR RHCGVGERDC TPKAKKERKV KDSSVPRVQR ERSPLKKSVE 180
MVINGVSMDI SCLPVPVCSC TGFSQPCYRW GCGGWQSACC TTNVSMYPLP MSTKRRGTRI 240
AGRKMSQGAF RKVLEKLSSD GFDFSNSIDL KSHWAKHGTN KFVTIR
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
