PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676772230
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRF
Protein Properties Length: 508aa    MW: 57035.8 Da    PI: 7.3318
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676772230genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC44.23.3e-14146171126
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkk 26 
                d+epgrC+RtDGKkWRCsr+v++g+ 
  676772230 146 DPEPGRCKRTDGKKWRCSRDVVGGEE 171
                79*********************986 PP
2QLQ53.38.7e-1978112337
        QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                F++aQ+q+L+ Q+l+y+y++a++ vP+eLl++i+k
  676772230  78 FSWAQWQELELQALIYRYMLAGASVPQELLLPIKK 112
                *********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009518.6E-1276112IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.41277112IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.3E-1378110IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166713.801146190IPR014977WRC domain
PfamPF088791.6E-10147172IPR014977WRC domain
SMARTSM007325.6E-27360464IPR006641YqgF/RNase H-like domain
Gene3DG3DSA:3.30.420.1405.3E-34360501IPR006641YqgF/RNase H-like domain
SuperFamilySSF530984.1E-29360498IPR012337Ribonuclease H-like domain
HamapMF_0065118.186360499IPR005227Putative pre-16S rRNA nuclease
PfamPF036524.1E-29361496IPR005227Putative pre-16S rRNA nuclease
TIGRFAMsTIGR002503.2E-17363496IPR005227Putative pre-16S rRNA nuclease
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006364Biological ProcessrRNA processing
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDLQLKQWRS QQQNESEEQG SATKISNFFF DQIQSQTATS AAALPLFVPE PTSSSSFSCF  60
SPDSSSSSSR FPKMGNFFSW AQWQELELQA LIYRYMLAGA SVPQELLLPI KKSLFHQSPL  120
NYLHHPLQHN FPHHQPSWYW GRGAMDPEPG RCKRTDGKKW RCSRDVVGGE ELGHGQNNPF  180
FSSGSSHSST QHLHLNSHQS CSSEMKQESN NNKRPYEAHS GFSNGRSDDG HILRHFFDDW  240
PRSSDSTSSP MSSSTCHLSI STPGNASSDV SLKLSTGNEE DEANMRNNNN NEREQQQNMN  300
WWSSGGNHHN MGGPLAEALR SASSTSSVLH QMGISTQKMK YVKPLRLLGD ALKTKVSVPG  360
RFLGLDVGDK YVGLAISDPC NMIASPLSVL LRKKTNIDLM ATDFQNLVKS FSVSGLVVGY  420
PFGKQNNVED VVTVNLFIEE LRKTEKLKDV KYTYWDERLS SKTVELMLKP LNLHPVQEKT  480
MLDKFAAVVI LQEYLDYANR YVNTPPAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1vhx_A6e-133614994140Putative Holliday junction resolvase
1vhx_B6e-133614994140Putative Holliday junction resolvase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676772230
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1174330.0AK117433.1 Arabidopsis thaliana At3g52910 mRNA for unknown protein, complete cds, clone: RAFL17-03-N06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491813.10.0PREDICTED: growth-regulating factor 4
SwissprotQ8L8A71e-161GRF4_ARATH; Growth-regulating factor 4
TrEMBLA0A0D3BYD80.0A0A0D3BYD8_BRAOL; Uncharacterized protein
STRINGBo4g122960.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1163622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.11e-140growth-regulating factor 4
Publications ? help Back to Top
  1. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]