PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676772498
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 307aa    MW: 35099.8 Da    PI: 8.8258
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676772498genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.99.4e-171051243
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
               +i n+s r+ tf kR++g++KK +ELS+LC++ ++ ii+s+ 
  676772498 10 FIANDSSRKATFKKRKKGLIKKVNELSTLCGITACAIIYSPY 51
               899*************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.7E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.89149IPR002100Transcription factor, MADS-box
CDDcd002662.09E-23285No hitNo description
SuperFamilySSF554556.54E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-171051IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MTRKKVKLAF IANDSSRKAT FKKRKKGLIK KVNELSTLCG ITACAIIYSP YDTNPEVWPS  60
NSGVQRIISD FRTLPEMDQH KKMVDQETFL RQRIAKASEL LKRQRKDNRE MEMTEVMFQC  120
LVGNMGMFHL NIMDLNDLGY LIDQSLKDVN RRIEMLGNSS MEVGESSNDA MAAAPSEATG  180
TLAVVASTTA PPATIQHHHH QQLFRHPAAP HVGFYDQQPR SLNLNHHQNQ QHWFMEMMNH  240
PEQMSYAAEK MGFPFMHDNH HHHHHHHFQQ QQQQIPGDST TTPTAVVSSS SVNPVTSPNP  300
TNNLWFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFIANDSSRKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676772498
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454705.11e-154PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-123AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A3P6AW001e-147A0A3P6AW00_BRACM; Uncharacterized protein
STRINGBra029469.1-P1e-147(Brassica rapa)
STRINGBo9g078450.11e-147(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-116AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]