PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676773134
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 174aa    MW: 19874.1 Da    PI: 6.358
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676773134genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-1591134347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E++ ++++  ++G+g+W++I+r m+  Rt+ q+ s+ qky
        676773134  91 PWTENEHKSFLEGLDKYGKGDWRSISRFMQ-SRTPTQVASHAQKY 134
                      8*****************************.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.6253IPR001005SANT/Myb domain
SuperFamilySSF466892.87E-5458IPR009057Homeodomain-like
PROSITE profilePS5129419.58384139IPR017930Myb domain
SuperFamilySSF466891.64E-1686138IPR009057Homeodomain-like
TIGRFAMsTIGR015579.1E-1787138IPR006447Myb domain, plants
SMARTSM007178.1E-1188137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-1188134IPR009057Homeodomain-like
PfamPF002493.2E-1391134IPR001005SANT/Myb domain
CDDcd001672.69E-1191135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MATKYWTRAD DKRFETALAQ FPDNSPTRFE DIASNLQIPF VDVIYYYDAL LHDIDLIESG  60
QYDTITYPED DVAGISSQTK HMGTNMKKGT PWTENEHKSF LEGLDKYGKG DWRSISRFMQ  120
SRTPTQVASH AQKYFLRQSV DKAKKRSSIH DIASVDNAAN NGTVPPDDFL GIRR
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00344DAPTransfer from AT3G10580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676773134
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013730893.16e-69transcription factor DIVARICATA-like
SwissprotQ8S9H77e-38DIV_ANTMA; Transcription factor DIVARICATA
SwissprotQ9FNN67e-38SRM1_ARATH; Transcription factor SRM1
TrEMBLM4EZ873e-66M4EZ87_BRARP; Uncharacterized protein
STRINGBra034130.1-P4e-67(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09450.13e-54MYB_related family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  4. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]