PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676773256
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 636aa    MW: 72242.8 Da    PI: 9.9663
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676773256genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.18.9e-20329421197
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                ffk++ + d +++++  lp +f+++++ +k  s +++++ ++g sWev +  +k+++  y+ ++GW++Fv++n+L e++fv+F+++g ++f  +v ++
  676773256 329 FFKIFQSVDLSSECMRALPYNFMKNIS-SKDFSYKMVIRAQWGSSWEVDI--SKNPRFyYMEKTGWNQFVSDNDLGENEFVTFTHKGLMCF--NVNIY 421
                89***999***************7775.457999****************..******566669********************9988999..66665 PP
2B332.41.6e-105466221291
                HTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
         B3  12 ksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                 ++ l +p+ f e++   ++es + t+++++g  sWev +    + +r+++++GW++ +++  L +gD ++Fkl++ +ef 
  676773256 546 YLKFLAIPRVFEEAYI--PNESLMYTIRHSKGkGSWEVLC--LVRESRTIFSSGWSRLAREFPLSVGDRCTFKLIKPTEFV 622
                4566899999988885..4577788899988868******..77777899************************9877774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.110.104.3E-377150IPR016135Ubiquitin-conjugating enzyme/RWD-like
SuperFamilySSF544951.51E-3812136IPR016135Ubiquitin-conjugating enzyme/RWD-like
CDDcd001953.04E-4413128No hitNo description
PROSITE profilePS5012724.23214126IPR000608Ubiquitin-conjugating enzyme E2
SMARTSM002122.4E-3014174No hitNo description
PfamPF001798.3E-2015126IPR000608Ubiquitin-conjugating enzyme E2
Gene3DG3DSA:2.40.330.103.4E-18323425IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-20324429IPR015300DNA-binding pseudobarrel domain
CDDcd100175.38E-18328421No hitNo description
SMARTSM010194.4E-23329424IPR003340B3 DNA binding domain
PfamPF023626.1E-18329420IPR003340B3 DNA binding domain
PROSITE profilePS5086312.802329424IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-16533624IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-13534622IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.701535629IPR003340B3 DNA binding domain
CDDcd100172.00E-9536623No hitNo description
SMARTSM010191.1E-9538628IPR003340B3 DNA binding domain
PfamPF023626.1E-9542624IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0005783Cellular Componentendoplasmic reticulum
GO:0016020Cellular Componentmembrane
GO:0048471Cellular Componentperinuclear region of cytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0004842Molecular Functionubiquitin-protein transferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MADERYNRKN PAVKRILQEV KEMQANPSDD FMSLPLEENI FEWQFAIRGP GDTEFEGGIY  60
HGRIQLPSDY PFKPPSFMLL TPNGRFETNT KICLSISNYH PEHWQPSWSV RTALVALIAF  120
MPTSPNGALG SVDYPKEERR TLAIKSRDAP PKYGSPERQK LIDEIHHYIL SKATVVPKPI  180
PLECNQAPST ESVARSQTEP QEAITVVEER STATADAIAD DQIIEEAAEA VNTTANVSPT  240
AGALATVEVA AKASGSGEQT TVRRAAQKPV DDRLFTWAAV GLTIAIVVLL LKKFIRSSGY  300
EKLLKERHKE MGWKGDFRRI KEERKNMSFF KIFQSVDLSS ECMRALPYNF MKNISSKDFS  360
YKMVIRAQWG SSWEVDISKN PRFYYMEKTG WNQFVSDNDL GENEFVTFTH KGLMCFNVNI  420
YGKNGKEIVV PRNPPTTTPF SGIKKEQGES SSYKDVKKEE ETGESMAGVE PETSNKKAED  480
SKTYKKKKKS KKEVNSVELG ECSRGSKLRG RKKKAEKPKT TKKKKIKCRK TKNGIPEFKM  540
TIRRSYLKFL AIPRVFEEAY IPNESLMYTI RHSKGKGSWE VLCLVRESRT IFSSGWSRLA  600
REFPLSVGDR CTFKLIKPTE FVLMSKKGRK EITVID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2f4w_A2e-361214615148ubiquitin-conjugating enzyme E2, J2
2f4w_B2e-361214615148ubiquitin-conjugating enzyme E2, J2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1510524RKKKAEKPKTTKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676773256
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3869350.0AF386935.1 Arabidopsis thaliana Unknown protein (K14A17.7) mRNA, complete cds.
GenBankBT0205300.0BT020530.1 Arabidopsis thaliana At3g17000 mRNA, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.13e-99B3 family protein