PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676773266
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family CAMTA
Protein Properties Length: 861aa    MW: 97873.4 Da    PI: 6.9411
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676773266genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1160.72.7e-50291462118
       CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100
                l+e k+rwl+++ei+a+L n + +++  ++ + p+sg++iL++rk++r+frkDG++wkkkkdg+tv+E+he+LKvg  e +++yYah+e+n+tf rrcyw
  676773266  29 LDEaKSRWLRPNEIYAVLSNPKYFTINVKPVNLPNSGRIILFDRKMLRNFRKDGHNWKKKKDGRTVKEAHEHLKVGDEERIHVYYAHGEDNTTFVRRCYW 128
                55669*********************************************************************************************** PP

       CG-1 101 lLeeelekivlvhylevk 118
                lL++++e+ivlvhy++++
  676773266 129 LLDKARENIVLVHYRDTQ 146
                ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000180214IPR018247EF-Hand 1, calcium-binding site
PROSITE profilePS5143772.1725151IPR005559CG-1 DNA-binding domain
SMARTSM010762.6E-7728146IPR005559CG-1 DNA-binding domain
PfamPF038593.5E-4431144IPR005559CG-1 DNA-binding domain
SuperFamilySSF812963.57E-14318404IPR014756Immunoglobulin E-set
PfamPF127961.4E-6506584IPR020683Ankyrin repeat-containing domain
CDDcd002046.99E-15506614No hitNo description
Gene3DG3DSA:1.25.40.203.2E-17508617IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.07E-16513621IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.22522587IPR020683Ankyrin repeat-containing domain
SMARTSM002481.2E-5555584IPR002110Ankyrin repeat
PROSITE profilePS5008811.514555587IPR002110Ankyrin repeat
SuperFamilySSF525408.76E-5695770IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.144704728IPR000048IQ motif, EF-hand binding site
PfamPF006120.22704720IPR000048IQ motif, EF-hand binding site
SMARTSM0001585719741IPR000048IQ motif, EF-hand binding site
SMARTSM000150.024742764IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.255743767IPR000048IQ motif, EF-hand binding site
PfamPF006120.014744764IPR000048IQ motif, EF-hand binding site
SMARTSM0001513820842IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.224821850IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 861 aa     Download sequence    Send to blast
MDGDGSGRLT DSEIHGFHTL QDLDVKTMLD EAKSRWLRPN EIYAVLSNPK YFTINVKPVN  60
LPNSGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH LKVGDEERIH VYYAHGEDNT  120
TFVRRCYWLL DKARENIVLV HYRDTQEAAT TSGDSNSPIS VSAHSSSNLV AAEDIDFNAD  180
NSRYLATNYT PVVKNHEIRL HDINTLDWDE LLVQTDLDNQ SAPIVDDMSY FTEQLQNAAD  240
GSAEHVNVAV ADESLDALLN NGPQSRENFG RWMNSFIGDS NGSLEDPSFE DMVTLEQDPL  300
APQAAFHPHS NIPEQIFNIT EVSPAWAYSS EKTKILVTGI LHNSYQHLGS SNLFCICGDS  360
SVPAEYVQAG VYRCFIPPHS PSMVNLYLSA DGHKPISQCF SFEHRPDPVF GKTVSEDNQE  420
SKWEEFELQV RLAHLLFTSS NKLNVLSSKI SPENVLDAKK LASKTFHLLN SWAYLIKSVQ  480
GNEVSLDQAK DHIFELTLKN RIKEWLVEKV LEGRNTRDYD SKGLGVIHLC AILGYKWSIQ  540
LFSLSGLSLD YRDKQGWTAL HWAAYYGREK MVGALLTAGA KPNLVTDSRK DNLGGCTAAD  600
LAQQNGFDGI AAYLAEKCLV AQFIDMKIAG NISGNLEASK GEMSHQGALP DDEQNLKDAL  660
AAYRTAAEAA ARIQGAFREK ALKAARSKVI QFANREEEAK SIIAAMKIQN AFRKYDTRRK  720
IEAAYRIQCR FQTWKMRREF LNMRRQAIRI QAAFRGLQAR KQYRKILWSV GVLEKAIMRW  780
RHKRKLFTGL QVNQAEAEEN PPGEAEEDFY KASQRQAEER LERSVVRVQA MFRSKKAQED  840
YRRMKLTHEE AQLEYECMQD I
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676773266
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406788.10.0calmodulin-binding transcription activator 6
SwissprotQ9LSP80.0CMTA6_ARATH; Calmodulin-binding transcription activator 6
TrEMBLV4NP000.0V4NP00_EUTSA; Uncharacterized protein
STRINGXP_006406788.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]