PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676773716
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 263aa    MW: 30586.6 Da    PI: 8.2271
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676773716genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.22.9e-152266750
               HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
     SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
               s +++ +  R ++i+KKA+ELS+LCd ev+vi +  +g+l  +++
  676773716 22 SSKNTNLLLREKTIFKKASELSTLCDNEVCVIHYDRNGNLvNTWP 66
               667788899****************************98725676 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-51267IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-1416102IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.8112161IPR002100Transcription factor, MADS-box
PfamPF003199.5E-112162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSSSRNKEPK LSVRNKTCFK KSSKNTNLLL REKTIFKKAS ELSTLCDNEV CVIHYDRNGN  60
LVNTWPEDQS KVRDMAERFS RLSDREKLKK SFNLSEFLNK KLIDEWKRSF KNENEHKILV  120
EKILEFEGSL KNQLQVFQER LSFYHQITTE QDQSHLAVIP VQNHNFPLSP TFSPQDLPSS  180
SLIEAPLMNF CPYGLVPDHQ QQQTQSFTNL LMSGDDMSTS TYSLNHQRQN KFSIFVFNHE  240
TATVTQLQDS VPLSFDQTCN LKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap676773716
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022574541.13e-77agamous-like MADS-box protein AGL53
TrEMBLA0A397Y9Z14e-82A0A397Y9Z1_BRACM; Uncharacterized protein
STRINGBra018767.1-P7e-74(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.12e-55AGAMOUS-like 53