PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676774048

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

TALE

Protein Properties

Length: 648aa MW: 71494.6 Da PI: 6.8757

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676774048	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.8	1e-09	454	491	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yps +++ LA+++gL+ +qV++WF N R + 676774048 454 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 491 665569******************************88 PP
2	BELL	123.6	7.7e-40	312	383	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+ 676774048 312 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQL 383 589******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.8E-86	241	381	IPR006563	POX domain
Pfam	PF07526	8.6E-52	247	380	IPR006563	POX domain
PROSITE profile	PS50071	12.86	432	495	IPR001356	Homeobox domain
SMART	SM00389	1.1E-9	435	499	IPR001356	Homeobox domain
CDD	cd00086	1.83E-12	435	496	No hit	No description
SuperFamily	SSF46689	1.33E-17	436	502	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-28	438	501	IPR009057	Homeodomain-like
Pfam	PF05920	2.9E-18	452	491	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence Send to blast
MGLATTTLPR PHHRSKTLDN NSSDSMSQDY HHHQGIFSFS NGFHRSSSSH QEEVEESAVS 60 GAPIPVYETA GMLSEMFSFP GGGNGGSGEI LDQSTKQLLE QQNRHNNNNN NNSTLHMLLP 120 NHHQGYGFAN EQQQHFTWPS SSDHQSQGDM IGTVHVEGGK GLSLSLSSSL EAAAAAKAEE 180 YRSIYCAAVD GTSSSSNASA HHHHQFNQFK TLLLDNSTSH HQAVGHFGSS SSSPMGASSS 240 IGGIYTLRSS KYTKPAQELL EEFCSVGRGH FKKNKLSRNN SNPNTSGGGG GGGGSSSSAG 300 VANDNPPLSP ADRIEHQRRK VKLLSMLEEV DRRYNHYCEQ MQMVVNSFDQ VMGYGAAVPY 360 TTLAQKAMSR HFRCLKDAVA VQLKRSCELL GDKEAAGAAS SGLTKGETPR LRLLEQSLRQ 420 QRAFHHMGMM EQEAWRPQRG LPERSVNILR AWLFEHFLNP YPSDADKHLL ARQTGLSRNQ 480 VSNWFINARV RLWKPMVEEM YQQEAKEREE EELQENQKED YQQQRRHQQT NNSNNNDTKP 540 NESNFTLVQT ITAQTPTTTM MTSTPHENDS SFLPSSASVV TAAPHGVSDT FNAATCQQDV 600 SDFHVDDGVI RFGTKQAGDV SLTLGLRHAG NMPDTKNPSF SVRDFGDF

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence Send to blast

MGLATTTLPR PHHRSKTLDN NSSDSMSQDY HHHQGIFSFS NGFHRSSSSH QEEVEESAVS  60
GAPIPVYETA GMLSEMFSFP GGGNGGSGEI LDQSTKQLLE QQNRHNNNNN NNSTLHMLLP  120
NHHQGYGFAN EQQQHFTWPS SSDHQSQGDM IGTVHVEGGK GLSLSLSSSL EAAAAAKAEE  180
YRSIYCAAVD GTSSSSNASA HHHHQFNQFK TLLLDNSTSH HQAVGHFGSS SSSPMGASSS  240
IGGIYTLRSS KYTKPAQELL EEFCSVGRGH FKKNKLSRNN SNPNTSGGGG GGGGSSSSAG  300
VANDNPPLSP ADRIEHQRRK VKLLSMLEEV DRRYNHYCEQ MQMVVNSFDQ VMGYGAAVPY  360
TTLAQKAMSR HFRCLKDAVA VQLKRSCELL GDKEAAGAAS SGLTKGETPR LRLLEQSLRQ  420
QRAFHHMGMM EQEAWRPQRG LPERSVNILR AWLFEHFLNP YPSDADKHLL ARQTGLSRNQ  480
VSNWFINARV RLWKPMVEEM YQQEAKEREE EELQENQKED YQQQRRHQQT NNSNNNDTKP  540
NESNFTLVQT ITAQTPTTTM MTSTPHENDS SFLPSSASVV TAAPHGVSDT FNAATCQQDV  600
SDFHVDDGVI RFGTKQAGDV SLTLGLRHAG NMPDTKNPSF SVRDFGDF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	8e-16	441	498	1	58	Homeobox protein Meis1
4xrs_B	8e-16	441	498	1	58	Homeobox protein Meis1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676774048

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013605344.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Refseq	XP_013605345.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Refseq	XP_013605346.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Refseq	XP_013605348.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Swissprot	Q94KL5	0.0	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	A0A0D3DVS8	0.0	A0A0D3DVS8_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FJY0	0.0	A0A3P6FJY0_BRAOL; Uncharacterized protein
STRING	Bo8g100290.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	0.0	BEL1-like homeodomain 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]