PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676774550
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GATA
Protein Properties Length: 503aa    MW: 56490.7 Da    PI: 6.8323
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676774550genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA503.9e-16741135
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
               C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  676774550  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
               ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.0E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-12546No hitNo description
CDDcd002022.47E-17663No hitNo description
Gene3DG3DSA:3.30.50.101.2E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.4E-14741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RAEGDEIEIE  60
EHRGQRMMMI NGKSLNKKIP KRKSYQENFT VKRTNLEFSN GFKKRALDEE ASNRSSSGSV  120
VSNSESCDQS NAWETTFPCK KRTCVGRPKA ASSVEKLTKD LYSILQEQQS SCLSGTSEED  180
LLFENESPMA IGHGSVLMRD PHSGARDEES EASSLLVESS KSSSIHSVEY VVNRGQRSLN  240
FGGKAIKQEQ LNRTKSQVLG RHSLPLCNID LKINTTTLRW KLLLQNVFNF DEFIEKFTKE  300
EQQKLMKLLP EVDSVDLPNS LMSMFESSQF KENFPLFQQL VADGVFGTLS SSSSSGSKLE  360
DYKTLAKLAL SDLNKLHLLE SYHMLKEQRK GIEDSVTTIS RVSNPNPSDT HSLVTIERPC  420
ESLNQNFSET RGVMKSPKEV MKIRSKHIET EEIIETSVSS FNHMSYGGSM AFRYEDNDIS  480
DQDLLLDVPS NGSFPQAELL HMI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676774550
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434235.10.0PREDICTED: GATA transcription factor 27 isoform X1
SwissprotQ5PP380.0GAT27_ARATH; GATA transcription factor 27
TrEMBLD7MPX30.0D7MPX3_ARALL; Zinc finger family protein
STRINGXP_010494936.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.10.0GATA transcription factor 27