PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676774730
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ARR-B
Protein Properties Length: 544aa    MW: 61126.2 Da    PI: 4.8986
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676774730genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.54.5e-26200254155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                k+r++W+ eLH++Fv+av+q+G  +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  676774730 200 KARVVWSFELHQKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 254
                68****************************************************8 PP
2Response_reg71.53.4e-24121301107
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHT..........TTSEEEEEESTTTHH CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reee..........pklpiivvtahgeee 84 
                   vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e +           +++i++++  ge +
     676774730  12 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAREALRLLRERKdgYDIVISDVNMPDMDGFKLLEHVgLELDlpvisetsppADTKILMMSVDGETS 107
                   89*********************.***************999999********************9877777766665555666************* PP

                   HHHHHHHTTESEEEESS--HHHH CS
  Response_reg  85 dalealkaGakdflsKpfdpeel 107
                    + + ++ Ga d+l Kp+ ++el
     676774730 108 RVMKGVQHGACDYLLKPIRMKEL 130
                   ******************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363928.1E-1382527IPR017053Response regulator B-type, plant
SuperFamilySSF521724.84E-329143IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.3E-419145No hitNo description
SMARTSM004482.1E-3010134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.02811138IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.0E-2112131IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.61E-2913138No hitNo description
Gene3DG3DSA:1.10.10.608.7E-28197259IPR009057Homeodomain-like
SuperFamilySSF466893.58E-16198258IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-22200254IPR006447Myb domain, plants
PfamPF002492.2E-7202253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MEKCFSPLGL RVLVVDDDPT WLKILEKMLK KCSYEVTTCG LAREALRLLR ERKDGYDIVI  60
SDVNMPDMDG FKLLEHVGLE LDLPVISETS PPADTKILMM SVDGETSRVM KGVQHGACDY  120
LLKPIRMKEL KIIWQHVLRK KLQEVRDIEG CYEGGAEWMT RNDEAHFLGG EDVSFGKKRK  180
EFDFEKKFLQ DESDPSSSKK ARVVWSFELH QKFVNAVNQI GCDHKAGPKK ILDLMNVPWL  240
TRENVASHLQ KYRLYLSRLE KGKEELKCYS GGVKNMDSPP KDAEFNSGHQ SPGKASYAFS  300
GGSSLLHKAT ETDPKQLASS SVSDPSSDVH MPPKAKKTRI GFDPPISSST FDSLLPWNDV  360
PDPLESKPPI LYDNSFLQQQ PLPSQSSYVA TSAPTLMEEE LKPSYENPAG GTCVNADEFV  420
MPQDNSPTVS LQDLELSAPS AISCMKPQEF SSSVTNNTES ILRSLNWELP EPHHSGFIDT  480
DLDFSWLQGE RFFANTGLQN FPFQDYSSSP SLLSELPPHL WFGNERLPDP DEYTLMVDQG  540
LFIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17196259163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676774730
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391233.10.0two-component response regulator ARR11
SwissprotQ9FXD60.0ARR11_ARATH; Two-component response regulator ARR11
TrEMBLA0A087HGC40.0A0A087HGC4_ARAAL; Two-component response regulator
STRINGA0A087HGC40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.10.0response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]