PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676774830

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 201aa MW: 22368.4 Da PI: 7.6302

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676774830	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.8e-09	13	72	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC.........TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkas......kapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ f+ Lr++lP ++ +++K ++ + Av++I+++q 676774830 13 KLLHRNIERQRRQEMAVLFASLRSHLPLQYikvcssLSSQGKRAMSDHVNGAVNFINDMQ 72 567999********************888*8888899999********9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.74E-12	8	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.85E-6	9	76	No hit	No description
PROSITE profile	PS50888	11.204	11	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-6	13	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.9E-8	13	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MSNERDETKK EKKLLHRNIE RQRRQEMAVL FASLRSHLPL QYIKVCSSLS SQGKRAMSDH 60 VNGAVNFIND MQTRIKDLTA RRDELKRQID PIFPGPSSQT GSGSGAGSSR SDPASVMVQP 120 CVSGIEVVVN SSASGVEAWA LSRVLEVLHE QGLEVISSLT ARVNERLMYT IQAEVNSLVS 180 FDLAWLQQKL IEELEHSTTG Y

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676774830

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006401909.2	1e-104	transcription factor bHLH120
Swissprot	Q9FLI0	4e-97	BH120_ARATH; Transcription factor bHLH120
TrEMBL	V4LLM0	1e-103	V4LLM0_EUTSA; Uncharacterized protein
STRING	XP_006401909.1	1e-104	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	1e-93	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]