PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676774838
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 187aa    MW: 21789.1 Da    PI: 7.9656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676774838genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.7e-142576255
               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               +++h e+Er+RR+++ s +  Lr+llP  +   ++K s ++ + +Av+YI +Lq
  676774838 25 KMMHREIERQRRQEMASLYTSLRSLLPLHF--IQGKRSTSDQVNEAVNYITYLQ 76
               789*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.8782375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-112590IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-92580No hitNo description
PfamPF000102.3E-112576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-152591IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-62981IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDDCREKRRR CTKLRVSTDN NDMEKMMHRE IERQRRQEMA SLYTSLRSLL PLHFIQGKRS  60
TSDQVNEAVN YITYLQRKIK EMSSRRDELM LLSRGSFLDD SEDEMKMTNH VVVRHCLVGL  120
EIVFSSRCGS QPRLSSVLQL LSENGLSLLN SISSIVDDRL IYTIQAEVND MTLIDLGKLE  180
ESLVRMK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676774838
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3174304e-66AK317430.1 Arabidopsis thaliana AT5G51780 mRNA, complete cds, clone: RAFL24-28-D24.
GenBankBT0109524e-66BT010952.1 Arabidopsis thaliana At5g51780 mRNA, complete cds.
GenBankBT0116404e-66BT011640.1 Arabidopsis thaliana At5g51780 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107212.11e-119PREDICTED: transcription factor bHLH36-like
SwissprotQ9FLI15e-85BH036_ARATH; Transcription factor bHLH36
TrEMBLA0A397XIY01e-116A0A397XIY0_BRACM; Uncharacterized protein
STRINGBra022562.1-P1e-111(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.15e-76bHLH family protein