PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676775032
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 627aa    MW: 70644.2 Da    PI: 4.6393
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676775032genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.16e-1836848313128
        NAM  13 elvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvf 108
                 lv   L++  ++++   + +i+++d+y+ +Pw L++ v++   +++ew++Fs+r+kk +  + + r   + g+W++t k++e++  ++e  g k+ +v+
  676775032 368 GLVRVDLRNMDQKNE---SGCITTLDVYSNDPWLLDH-VDNdlfRRNEWFYFSQRSKKGN-RTVTGReGSEGGTWRSTTKKEEIVY-NEEIQGYKQNFVY 461
                555444444433333...357**************83.333345778********99875.55666647899**************.9999********* PP

        NAM 109 ykg..rapkgektdWvmheyrl 128
                +k+   + + + + W+m ey+l
  676775032 462 HKKvnGELEKNGCGWLMTEYSL 483
                *7522333446799******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.548356499IPR003441NAC domain
SuperFamilySSF1019418.37E-24357497IPR003441NAC domain
PfamPF023652.1E-9361483IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046786Biological Processviral replication complex formation and maintenance
GO:0005794Cellular ComponentGolgi apparatus
GO:0009506Cellular Componentplasmodesma
GO:0009705Cellular Componentplant-type vacuole membrane
GO:0003677Molecular FunctionDNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MACRGCLECL LKLLNFLLAV AGLGMIGYGI YLFVEYKRAT DNSLTLTPIN GVGDQSSVSL  60
GRPMLMAVAL SSNVFDNLPK AWYVCVPTCF LLVGIVGSPY LTISGFVHVQ LQYSLLLILL  120
ILAELGAAAF IFFDNSWRDE IPSDRTGNFD TIYNFLRENW NIVRWVALGA VVFEALLFLL  180
ALMVRAANSP AEYDSDDEFI APRQQIRQPF ISRQPAPVTG VPVAPTLDQR PSRSDPWSAR  240
MREKYGLDTS EFTYNPSESH RFQQMPTQPN EEKGRCTIIF LNRNNKTQTD SSKENLKNMA  300
TKITDKGKSK VDESSSEVDS VRAHEFASLS LTRDSNLTEA SSSRSDPLQA SSSLTVHPCL  360
RMCRTDLGLV RVDLRNMDQK NESGCITTLD VYSNDPWLLD HVDNDLFRRN EWFYFSQRSK  420
KGNRTVTGRE GSEGGTWRST TKKEEIVYNE EIQGYKQNFV YHKKVNGELE KNGCGWLMTE  480
YSLHNKIHDD LVLCFIRGKI ENKVKNEIVE EQVLQVGNNI LSNQVQDEET GSTGGVNQSE  540
TSTQQRDHGD AILTQQQQQQ EQDTPILSPP TPSEEGQDSG FEMKIDDDKN NDNNIMTMCH  600
QDQNQLANFD FCFDFAGADD DTVDIDS
Cis-element ? help Back to Top
SourceLink
PlantRegMap676775032
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532240.0AK353224.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-33-D01.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.12e-24NAC domain containing protein 6