PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676775280
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 420aa    MW: 45982.1 Da    PI: 9.3063
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676775280genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-0587108223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 C +C+++F +   L rH++ H
  676775280  87 ICDICDRRFCNFTALLRHQNIH 108
                6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.44E-583112No hitNo description
SMARTSM003550.005986108IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.67986113IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-487117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MAPSNSSSPK TNPKLEATVV AMEERRTSDG PKQGPPQEVV LESTTTEVDS KRKITEKPRG  60
LHVGLSIIRA GKNMKPLDPP REEVPLICDI CDRRFCNFTA LLRHQNIHKA DQEVARILKT  120
REPSFSPGQA FGRKPHNSYQ GKSHSVDVGG CSQDALSNDK YRGISRVPSD SIRGDGRSIR  180
STTFPVPPFN GGFTRDNTDM NMAVGYPVAP YGYTSHGFAT GIPLVTHNNN HLTLVSRKDN  240
FNDHRSLSYF DRRWLSFGPF ESTGGGSSYD YPSFYNGGIT MAPPANPDRQ FTHNTSDASP  300
SRDPVSLELS LRPPNEIGSC TNNNDNSSAQ GLLSLELSLG IPESRGRSNS TSSVDQSCNG  360
QVTGGGVKDL NLPVRPRVSR FHFHGHNPLE SIIRNAPLPH PPPNDENVSG YDRKGKKPKV
Cis-element ? help Back to Top
SourceLink
PlantRegMap676775280
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1875167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.16e-12C2H2 family protein