PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676776022
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 559aa    MW: 61313.2 Da    PI: 7.6062
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676776022genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-08233253526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f++ G C+ Gd+C +aHg
  676776022 233 PCPEFRK-GSCPKGDSCEYAHG 253
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.13E-1241144IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.49646147IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00674676IPR002110Ankyrin repeat
PfamPF136373.2E-64799No hitNo description
Gene3DG3DSA:1.25.40.202.1E-1347148IPR020683Ankyrin repeat-containing domain
CDDcd002047.24E-1248127No hitNo description
SMARTSM002481081113IPR002110Ankyrin repeat
SMARTSM002483100117152IPR002110Ankyrin repeat
SMARTSM003566.3E-5228254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976228255IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5233253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-6233254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4260292IPR000571Zinc finger, CCCH-type
SMARTSM0035643263286IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.812263287IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MMVLLEFAAC DDLPSFQREI DEKGLDLDEP GLWYCKRVGS NKMGLAERTP LMVAAMYGSK  60
KVLNFIISSG KSDVNRVCGE ERVTALHCAV AGCSLNMVEV INALLDASAL ADAVDANGNQ  120
PLDLFVRVSR FVASPRKKAV ELLLRGGGVV GVGGLIDEAV EEEIKIVSKY PADASLPDIN  180
EGVYGSDEFR MYSFKVKPCS RAYSHDWTEC AFVHPGENAR RRDPRKYPYT CVPCPEFRKG  240
SCPKGDSCEY AHGVFESWLH PAQYKTRLCK DETGCARKVC FFAHKREEMR PVNASTGSAV  300
AQSPFNSLEM MPGLSPLAYS SGVSTPPVSP MANSVGSSPR NGASWQNRVN TLTPPALQLN  360
GGSRLKSTLS ARDMDIDMEM ELRLRGFNNV EETFGSYVSS PSRNSQMGQN MNQHYPSSPV  420
RQQAPHHGFD SSAAVAAAVM NARSSAFAKR SLSFKPAAQA ASPSNLSDWG SPSGKLEWGM  480
QGDELNKMRR SVSFGIHGNN NSNNNSNGAR DYRNEPDVSW VNSLVKDSVV SERGFGMNER  540
LRLMSWAEQM YREKEQTVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676776022
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880437.10.0zinc finger CCCH domain-containing protein 47
SwissprotQ93ZS90.0C3H47_ARATH; Zinc finger CCCH domain-containing protein 47
TrEMBLD7LVA70.0D7LVA7_ARALL; Zinc finger (CCCH-type) family protein (Fragment)
STRINGfgenesh2_kg.5__2030__AT3G55980.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55980.10.0salt-inducible zinc finger 1
Publications ? help Back to Top
  1. LeBlanc M,Kim G,Patel B,Stromberg V,Westwood J
    Quantification of tomato and Arabidopsis mobile RNAs trafficking into the parasitic plant Cuscuta pentagona.
    New Phytol., 2013. 200(4): p. 1225-33
    [PMID:23914903]
  2. Liang Y,Gao Y,Jones AM
    Extra Large G-Protein Interactome Reveals Multiple Stress Response Function and Partner-Dependent XLG Subcellular Localization.
    Front Plant Sci, 2017. 8: p. 1015
    [PMID:28659958]