PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676776072
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 387aa    MW: 42765.2 Da    PI: 5.4953
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676776072genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.7e-184590147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+teEd  l ++v +lG+++W++Iar ++ gR++k+c++rw + 
        676776072 45 KGPWSTEEDAVLTKLVSKLGPRNWSLIARGIP-GRSGKSCRLRWCNQ 90
                     79******************************.***********985 PP
2Myb_DNA-binding53.36.3e-1797141147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r++++ eEd  ++ a++ +G++ W+ Ia++++ gRt++ +k++w++ 
        676776072  97 RKPFSDEEDRMIISAHAIHGNK-WAVIAKMLP-GRTDNAIKNHWNST 141
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.2534095IPR017930Myb domain
SuperFamilySSF466896.47E-3142138IPR009057Homeodomain-like
SMARTSM007174.6E-154493IPR001005SANT/Myb domain
PfamPF002497.3E-174590IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-254698IPR009057Homeodomain-like
CDDcd001679.06E-144789No hitNo description
SMARTSM007173.3E-1796144IPR001005SANT/Myb domain
PROSITE profilePS5129421.81896146IPR017930Myb domain
PfamPF002492.5E-1597141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2399145IPR009057Homeodomain-like
CDDcd001678.85E-1399142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEEETHRSEP LPLLSAESDK VIETELSELV GGDGGSGGGM KSKVKGPWST EEDAVLTKLV  60
SKLGPRNWSL IARGIPGRSG KSCRLRWCNQ LDPCLKRKPF SDEEDRMIIS AHAIHGNKWA  120
VIAKMLPGRT DNAIKNHWNS TLRRKYADLW NNSQWMANHQ VTTAYVKNEN VDGVVSTQPI  180
KQQLNTQGEV ISPPEPPQVV VDVAMDDDAL VNEPQEQAPM IESSTPVVES NVFRPVARVG  240
AFRVYNPTSQ RNGYRDHNVV PCEGPLIQAA KPDSLAGKFL QSLCGEPNIP SKCGHGCSNF  300
PAETNVSGKS VLGPEFVDYE EPCVVFNQEL ISIATDLNNI AWIKSGLDNS VVREAEQSLK  360
FDSFSFDDPR IKFSGMMPRQ DFFCARS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-40441453104C-Myb DNA-Binding Domain
1msf_C7e-40441453104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676776072
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526601e-158AK352660.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-P04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403424.10.0transcription factor MYB25
SwissprotO041921e-114MYB25_ARATH; Transcription factor MYB25
TrEMBLE4MVW30.0E4MVW3_EUTHA; mRNA, clone: RTFL01-04-P04
TrEMBLV4LQU60.0V4LQU6_EUTSA; Uncharacterized protein
STRINGXP_006403424.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.10.0myb domain protein 109
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]