PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676776274
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 303aa    MW: 34133.6 Da    PI: 4.9606
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676776274genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.73.1e-131248237
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-.EEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCda.evav 37
               +ienks ++vtf+kRr g++ KA EL+ L  a ++a+
  676776274 12 KIENKSVKSVTFTKRRDGLFRKAAELCLLSSAsQIAI 48
               69***************************87624555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.699351IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-12364IPR002100Transcription factor, MADS-box
CDDcd002667.53E-22480No hitNo description
SuperFamilySSF554552.35E-15578IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-9525IPR002100Transcription factor, MADS-box
PfamPF003196.9E-121253IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-92540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGGTKRKIEI VKIENKSVKS VTFTKRRDGL FRKAAELCLL SSASQIAILA TPPSSNSHAS  60
FYSFGHSSVD HVVSSLLNGK SPLPTNQVNK SGLGFWWENE GFDRSENIED LKEATDAISR  120
MLNKLRVQLD AMQSNQRDGG LVMHQDEVIQ LGNTSTNNNE EMMNQITKFE GTSGRRNPEM  180
VRLKKLPIDP QCREVGAVED EVTFKEEIVS DDGSRDQREV VPDDDCEAIG DDPADEDELE  240
ENVVKKKWSK TYQPNFKILR TMIEWTAMIV GTMSYGMRIL YLIEREKRRE SLPVCVILAS  300
IGD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00208DAPTransfer from AT1G60920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676776274
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454191.11e-90PREDICTED: agamous-like MADS-box protein AGL97
RefseqXP_018454192.11e-90PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A0D3E5671e-87A0A0D3E567_BRAOL; Uncharacterized protein
STRINGBo9g043530.12e-88(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.13e-69AGAMOUS-like 55