PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676776370
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GeBP
Protein Properties Length: 340aa    MW: 39177.4 Da    PI: 8.2985
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676776370genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57396.52.6e-30118208497
     DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                ++l+s++Dei+lLqG+++fka+++k+p++d  ++yef+k+s+sf+++ +q+ eKir L+kK+++k++    g++ sf ++h++k+felsk iWg
  676776370 118 RQLFSDKDEILLLQGILNFKADKEKNPFEDKLGLYEFMKDSLSFHATLDQFKEKIRYLQKKYTRKEES---GDQASFLNPHQKKCFELSKAIWG 208
                579*************************************************************9999...**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.5E-24119208IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAKNLKHPLE YQQSVSLRSC EKEMEIISSE EEEEGEEHHT IFSTEEDESE HSPRRFSAKG  60
IYGPGEAQPS ARAFPSRKKR QSDEGTPTNV NLKRPKKIST EGEETMEGAN TKQLFRRRQL  120
FSDKDEILLL QGILNFKADK EKNPFEDKLG LYEFMKDSLS FHATLDQFKE KIRYLQKKYT  180
RKEESGDQAS FLNPHQKKCF ELSKAIWGAE GIAVESAISS NGTPKESKRR VTKKLNLVSS  240
RNDKKIEANS KRGDMEESPL VTESDWDENS FFLGMDYLKE KWTKVRVGTK KKTQEKMKTL  300
QAAEFECKKV EEMLKVMKDQ CAHKKVELLN EVTALIMASN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223229PKESKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00214DAPTransfer from AT1G66420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676776370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633106.11e-106PREDICTED: mediator-associated protein 1-like
TrEMBLA0A397ZSQ51e-102A0A397ZSQ5_BRACM; Uncharacterized protein
STRINGBra028105.1-P2e-97(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13542721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.12e-54DNA-binding storekeeper protein-related transcriptional regulator