PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676776378
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GeBP
Protein Properties Length: 339aa    MW: 38210.4 Da    PI: 7.1209
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676776378genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57387.61.6e-27116206497
     DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                ++l+se+D i+lLqG++dfka+++k+p +d  ++yef+k+s+sf+++ +q+ eKir+++k ++ k+k    g + s+ ++h++k+fel k iWg
  676776378 116 KKLFSEKDVILLLQGMLDFKADKEKNPLEDKRGLYEFIKDSLSFDATFNQFKEKIRNIQKLYTSKEKS---GGQASILNPHQKKCFELYKAIWG 206
                789************************************************************99998...9999******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.2E-22116206IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAKDLKHHPL EAPSLASLSS SEKEMEVISS DEEEREDYHT IFSAEEEEPE DPPQRSSSKA  60
VCGSGEAHPS AWAVKSGTKR LSGGTSANVI LKQAKKLSTG GDEKKGANRK QLFRRKKLFS  120
EKDVILLLQG MLDFKADKEK NPLEDKRGLY EFIKDSLSFD ATFNQFKEKI RNIQKLYTSK  180
EKSGGQASIL NPHQKKCFEL YKAIWGAEVI AVDSAISPNG EPKVSEWGVT KKLNFVSSRN  240
DKNVGENSKR GDMEESPLVV TESDWDENSF FLGMDYMKES WSKVPIESKK KIQEKMKKLQ  300
ADEFECKKVE EMLKAMKDQC AHKKVELLNE VTALIMASS
Cis-element ? help Back to Top
SourceLink
PlantRegMap676776378
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633106.11e-107PREDICTED: mediator-associated protein 1-like
TrEMBLA0A397ZSQ55e-97A0A397ZSQ5_BRACM; Uncharacterized protein
STRINGBra028105.1-P2e-92(Brassica rapa)
STRINGBo4g136340.15e-93(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13542721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.14e-44DNA-binding storekeeper protein-related transcriptional regulator