PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676776380
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GeBP
Protein Properties Length: 263aa    MW: 30251 Da    PI: 4.8445
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676776380genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57381.21.5e-2562151497
     DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                +rl+s +Dei+lLqG++dfka+++ + ++d  ++ye +k+s+sf+++ +q+ +Ki ++++K++  +k    g e s+ ++h++k+f+l k iWg
  676776380  62 RRLFSAKDEILLLQGILDFKADKE-NTFEDKLELYELIKDSLSFDATLDQFKDKIWNMRNKYTSIEKS---GGEASIWNPHQKKCFKLYKAIWG 151
                699********************9.99************************************99999...9999******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.8E-2162151IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MAKDLKHHPS EAPSLASLSS SENEGEDHHT IFSTEEDEPE DPPQRSSSDE KKIANTKQLF  60
RRRLFSAKDE ILLLQGILDF KADKENTFED KLELYELIKD SLSFDATLDQ FKDKIWNMRN  120
KYTSIEKSGG EASIWNPHQK KCFKLYKAIW GAEGIAVDSA ISSSGEPKEE NSKRGDMEES  180
PLAVAESDWD ENSFFLGMDY LKESWTKLPI ETKKKTQEKM KKLHADEFEC KTNEEMLKAM  240
KDQWARKKVE LLNEITSLIM ASN
Cis-element ? help Back to Top
SourceLink
PlantRegMap676776380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633106.14e-92PREDICTED: mediator-associated protein 1-like
TrEMBLA0A397ZSQ51e-80A0A397ZSQ5_BRACM; Uncharacterized protein
STRINGBra028105.1-P4e-77(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13542721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.17e-37DNA-binding storekeeper protein-related transcriptional regulator