PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676776610
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 582aa    MW: 63358.2 Da    PI: 6.4522
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676776610genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.7e-0699119526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ff + G+C  G++C+F H+
  676776610  99 PCKFFGQ-GWCAKGNSCRFLHV 119
                7******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2294121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-694118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-499119IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MSDSDMDIDD DEVQVQVQQH TIAGPIEASD SQNDVKKHSD EQSKIIKDSI GNSQPIISGN  60
SGKNIILEGV KGTVLSRFPA PPQSFPPGNG PEQKRAALPC KFFGQGWCAK GNSCRFLHVN  120
EITNRTSQQQ AEINMAGTSG VQSLEERRSL ESKEGGRFPL LGQNGVTSLV NPSGGQRVFP  180
FTNEMRFMPL LDNMGRGSLQ KCGAVFTENR PGFVNSISSF PLRSSFVQEH GSSIASYRQP  240
DMGSTIPSYK QTDMGSSGPA WTGSVFSSAP MNQYASPLGN FENRNNMNGS GSLPMVQATS  300
VSSGQDAEVD TTSDKKKVSS NDWEPSEPFR ASFTIPPYIL PSSDALYDPF TDTENPDHRS  360
LNAPSPSKEK DAHKKSGQQK DGDSASGPQA QDCNNDDKNS SCSQNQFQET VGRKNLEEHG  420
VVEGVATSVV DQNDATTPSK EVSSSAAAEN RVVLKRSKPA GHESWHRSDG SSHQKVLKSE  480
EVDGEVRSDA GTKVMRQFRT AVVETIKEML KPLWREGRLT KDVHNMVVKR ATEKIVSAAV  540
QFRQVPTNTE SVEQYLSMSA PKIVKLVEGY VEKYGKPQGT IK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the FRIGIDA-mediated vernalization pathway, but not in the autonomous flowering pathway. Acts cooperatively with FRI (FRIGIDA) or FRL1 (FRIGIDA-LIKE 1) to promote FLC (FLOWERING LOCUS C) expression. Required for the stabilization of the FRI-C complex. {ECO:0000269|PubMed:16291783, ECO:0000269|PubMed:21282526}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676776610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637217.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1
SwissprotQ84VG70.0FES1_ARATH; Protein FRIGIDA-ESSENTIAL 1
TrEMBLA0A0D3BSB90.0A0A0D3BSB9_BRAOL; Uncharacterized protein
STRINGBo4g042370.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134681521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.10.0C3H family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]