PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676776966
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GATA
Protein Properties Length: 289aa    MW: 31514.3 Da    PI: 7.7704
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676776966genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.23.1e-20213247135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cg+ kTp+WR gp+g+ktLCnaCG++y++ +l
  676776966 213 CQHCGADKTPQWRAGPSGPKTLCNACGVRYKSGRL 247
                *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-17207257IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.479207243IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.23E-15209270No hitNo description
Gene3DG3DSA:3.30.50.102.5E-15211245IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.29E-14212260No hitNo description
PROSITE patternPS003440213238IPR000679Zinc finger, GATA-type
PfamPF003208.4E-18213247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MESFMDDLLN FSVPEEEEVD DEEDEGGVVV RSPRNITRRK TGFSRQTDSF GLLNPDDHPV  60
RIFLVRKRRE YPSFLKTHPL CFREGIVEEE DLEWISNKDA FPVIETFVGV LPSEHFSISS  120
PERETGDGKH LSPVSVLETS SHNSSLTTTT SNSSGGSNGS IMTATAGAST VTMMSCCVGF  180
NVPVKARSKR GGGGGQKRKA PSAAAAAAMG RKCQHCGADK TPQWRAGPSG PKTLCNACGV  240
RYKSGRLVPE YRPANSPTFS AELHSNSHRK IVEMRKQFLS GDADRRDCG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676776966
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024009589.11e-116GATA transcription factor 1
SwissprotQ8LAU91e-100GATA1_ARATH; GATA transcription factor 1
TrEMBLV4MXL81e-114V4MXL8_EUTSA; Uncharacterized protein
STRINGXP_006418795.11e-115(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129872430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.14e-96GATA transcription factor 1