PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676777512
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 526aa    MW: 60085.2 Da    PI: 5.4003
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676777512genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-183887255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a+++a+++++g
  676777512 38 KYVGVRRRP-WGRYAAEIRNPTT---KERYWLGTFDTAEEAALAYDRAARSIRG 87
               79*******.**********965...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-203896IPR016177DNA-binding domain
SMARTSM003802.9E-3238101IPR001471AP2/ERF domain
PROSITE profilePS5103221.2463895IPR001471AP2/ERF domain
PfamPF008471.0E-123887IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-273895IPR001471AP2/ERF domain
CDDcd000189.05E-313894No hitNo description
PRINTSPR003672.3E-83950IPR001471AP2/ERF domain
PRINTSPR003672.3E-86177IPR001471AP2/ERF domain
Gene3DG3DSA:3.40.50.3008.1E-83235504IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525401.75E-61236503IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006851.4E-59250503IPR000863Sulfotransferase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008146Molecular Functionsulfotransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MDFSGNLSAG SSSRSKKSHK QKQQQPQPQP QQHSEEIKYV GVRRRPWGRY AAEIRNPTTK  60
ERYWLGTFDT AEEAALAYDR AARSIRGLTA RTNFVYSDMP RGSSVTSFIS PDESQRFISE  120
LFNPPNQLEA SNNSTNNTLY SSTNNQNQDT IEFSYNGWPQ ESECGYQSIN NNDDHCDHEL  180
PPLPPSTCFG AELMIPETDS YWNVAHTTMD TFSFELDGFV DQNNLGENGT EGKTLQGILN  240
FQRGFEPQET DNIVASYPKS GTTWLKALTV ALLERSKHST NNHPLLSSNP HGLVPIVELR  300
LYFESSKPDL TDFSSPPRLF STHVPFHTLQ EGLKNTPCKI VYIWRNVKDA LVSLWYFECA  360
NLKIKEERSM LESMFESFCR GVSYYGPFWE HVLSYRRGSL EDSKNVLVLR YEELKIEPHA  420
QLKILAEFLG CPFSVEEEES GNVEEILELC SLGNLKNLEV NTTEKTSRGV EHKNFFRKGE  480
VGDSKNYLTP EMEMKIDMII QEKSRYGFKI LSYTISLIKV LSLFTM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1q44_A2e-6223550351316Steroid Sulfotransferase
2q3m_A2e-6223550351316Flavonol sulfotransferase-like
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676777512
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0210440.0AC021044.5 Arabidopsis thaliana chromosome I BAC F3H9 genomic sequence, complete sequence.
GenBankAC0694710.0AC069471.4 Arabidopsis thaliana chromosome 1 BAC F13K9 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4462950.0DQ446295.1 Arabidopsis thaliana clone pENTR221-At1g28160 ethylene-responsive element-binding family protein (At1g28160) mRNA, complete cds.
GenBankDQ6528640.0DQ652864.1 Arabidopsis thaliana clone 0000018995_0000013096 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447985.11e-164PREDICTED: cytosolic sulfotransferase 7-like
SwissprotQ9FZ911e-142SOT7_ARATH; Cytosolic sulfotransferase 7
TrEMBLA0A078FEP91e-158A0A078FEP9_BRANA; Sulfotransferase
TrEMBLA0A0D3BIK01e-158A0A0D3BIK0_BRAOL; Sulfotransferase
STRINGBo3g143100.11e-159(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129331529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.11e-110ERF family protein
Publications ? help Back to Top
  1. Lange BM,Ghassemian M
    Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
    Plant Mol. Biol., 2003. 51(6): p. 925-48
    [PMID:12777052]
  2. Klein M,Papenbrock J
    The multi-protein family of Arabidopsis sulphotransferases and their relatives in other plant species.
    J. Exp. Bot., 2004. 55(404): p. 1809-20
    [PMID:15234990]
  3. Kempema LA,Cui X,Holzer FM,Walling LL
    Arabidopsis transcriptome changes in response to phloem-feeding silverleaf whitefly nymphs. Similarities and distinctions in responses to aphids.
    Plant Physiol., 2007. 143(2): p. 849-65
    [PMID:17189325]