PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676778894
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 261aa    MW: 29233.7 Da    PI: 6.1782
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676778894genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86.3e-1685136155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P++    ++K + a+i+  A+++Ik+L+
  676778894  85 QRMTHIAVERNRRRQMNQHLSVLRSLMPQP---FAQKGDQASIVGGAIDFIKELE 136
                79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.2E-1483138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.26E-1483139No hitNo description
SuperFamilySSF474592.49E-1683148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.03184135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-1385136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-1190141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MTLEALSSNG LLNFLLSETL SPTPFKSLVD LEPSPDNDII ISKNTIPAIS PQEQSSRQPP  60
PASRGKKRRR RKPRVCKNEE EAENQRMTHI AVERNRRRQM NQHLSVLRSL MPQPFAQKGD  120
QASIVGGAID FIKELEHQLL SLEAHKLQKA KLNQTVTSST SQDSNREREN PHQPCSPSLS  180
QFFLHSYDPS QENRNGSTSS VKTDMEDIEV EESCQLSSVD DIAGAVHHML SIIEEEPFCC  240
SSLPELPFDF SVNHTNGAHS L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16571KKRRRRK
26572KKRRRRKP
36671KRRRRK
46773RRRRKPR
58596RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676778894
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535550.0AK353555.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-J01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398364.11e-122transcription factor bHLH71
SwissprotQ56XR01e-111BH071_ARATH; Transcription factor bHLH71
TrEMBLE4MYF81e-120E4MYF8_EUTHA; mRNA, clone: RTFL01-52-J01
TrEMBLV4LBP71e-120V4LBP7_EUTSA; Uncharacterized protein
STRINGXP_006398364.11e-121(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103892535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.12e-97beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]