PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676779274

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

ERF

Protein Properties

Length: 603aa MW: 68328.5 Da PI: 9.7617

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676779274	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.9	2.4e-18	21	71	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+Wv+eIr+p +r++lg+f taeeAa+a+++a+ ++g 676779274 21 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFNTAEEAARAYDQAAVLMNG 71 59***999.******8.....334*******************977765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.44E-31	21	80	No hit	No description
PROSITE profile	PS51032	21.654	22	79	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.2E-31	22	79	IPR001471	AP2/ERF domain
Pfam	PF00847	4.4E-11	22	67	IPR001471	AP2/ERF domain
SMART	SM00380	3.7E-39	22	85	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.83E-19	22	80	IPR016177	DNA-binding domain
PRINTS	PR00367	9.7E-10	23	34	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.7E-10	45	61	IPR001471	AP2/ERF domain
Pfam	PF03151	9.8E-23	274	560	IPR004853	Sugar phosphate transporter domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence Send to blast
MSEKHRDIKN PNYNIKMVHS KKFRGVRQRQ WGSWVSEIRH PLLKRRVWLG TFNTAEEAAR 60 AYDQAAVLMN GQSAKTNFPV IKSNGSDSPD VNSPLRSPKA LSELLNAKLR KNCKDQTPYL 120 TCLRLDNDSS NIGVWQKRAG SKTTQNWVKL VELGDGVKVR AGDIGTSKMK ENDEVEEEDQ 180 MAMQMIEELL NWTCPASSSN SERRPTRHDK KVQMEGKKSN WLIKEEWKLL IYHNRRLRRR 240 TTVQREHLYQ ELLGMGKGGS LSEGVIKNII LSYTYVAIWI FLSFTVIVYN KYILDKKMYD 300 WPFPISLTMI HMSFCSTLAF LLIKVFKFVE PVSMSRDTYV RSVVPIGALY SLSLWLSNSA 360 YIYLSVSFIQ MLKALMPVAV YSIGVLFKKE GFKSETMVNM LSISFGVAIA AYGEARFDVW 420 GVILQLGAVA FEATRLVMIQ ILLTSKGITL NPITSLYYVA PCCLAFLFVP WIVVEFPILR 480 DTSSFHFDFL VFGTNSFCAF ALNLAVFLLV GKTSALTMNV AGVVKDWLLI AFSWSVIKDT 540 VTPVNLFGYG IAFLGVAYYN HAKLQALKAK EAQKSAQQAD EETGRLLEDK EGIEGGRKNE 600 PQD

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence Send to blast

MSEKHRDIKN PNYNIKMVHS KKFRGVRQRQ WGSWVSEIRH PLLKRRVWLG TFNTAEEAAR  60
AYDQAAVLMN GQSAKTNFPV IKSNGSDSPD VNSPLRSPKA LSELLNAKLR KNCKDQTPYL  120
TCLRLDNDSS NIGVWQKRAG SKTTQNWVKL VELGDGVKVR AGDIGTSKMK ENDEVEEEDQ  180
MAMQMIEELL NWTCPASSSN SERRPTRHDK KVQMEGKKSN WLIKEEWKLL IYHNRRLRRR  240
TTVQREHLYQ ELLGMGKGGS LSEGVIKNII LSYTYVAIWI FLSFTVIVYN KYILDKKMYD  300
WPFPISLTMI HMSFCSTLAF LLIKVFKFVE PVSMSRDTYV RSVVPIGALY SLSLWLSNSA  360
YIYLSVSFIQ MLKALMPVAV YSIGVLFKKE GFKSETMVNM LSISFGVAIA AYGEARFDVW  420
GVILQLGAVA FEATRLVMIQ ILLTSKGITL NPITSLYYVA PCCLAFLFVP WIVVEFPILR  480
DTSSFHFDFL VFGTNSFCAF ALNLAVFLLV GKTSALTMNV AGVVKDWLLI AFSWSVIKDT  540
VTPVNLFGYG IAFLGVAYYN HAKLQALKAK EAQKSAQQAD EETGRLLEDK EGIEGGRKNE  600
PQD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-17	22	79	14	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676779274

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006258	0.0	AC006258.1 Arabidopsis thaliana BAC F18G18 from chromosome V near 60.5 cM, complete sequence.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_568469.1	0.0	Nucleotide-sugar transporter family protein
Swissprot	Q3E6T0	0.0	PT525_ARATH; Probable sugar phosphate/phosphate translocator At5g25400
TrEMBL	A0A1W6AJZ8	0.0	A0A1W6AJZ8_ARATH; UDP-Arabinofuranose Transporter 1 (Fragment)
STRING	AT5G25400.1	0.0	(Arabidopsis thaliana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25390.2	1e-102	ERF family protein

Publications ? help Back to Top
Bakker H, et al. Molecular cloning of two Arabidopsis UDP-galactose transporters by complementation of a deficient Chinese hamster ovary cell line. Glycobiology, 2005. 15(2): p. 193-201 [PMID:15456736] Bock KW, et al. Integrating membrane transport with male gametophyte development and function through transcriptomics. Plant Physiol., 2006. 140(4): p. 1151-68 [PMID:16607029] Rautengarten C, et al. The Golgi localized bifunctional UDP-rhamnose/UDP-galactose transporter family of Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(31): p. 11563-8 [PMID:25053812] Rautengarten C, et al. The elaborate route for UDP-arabinose delivery into the Golgi of plants. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(16): p. 4261-4266 [PMID:28373556]