PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676779768

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

WRKY

Protein Properties

Length: 223aa MW: 24747.7 Da PI: 4.8643

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676779768	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.3	2.3e-31	12	70	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ 676779768 12 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 70 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	33.109	6	72	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.9E-31	6	72	IPR003657	WRKY domain
SuperFamily	SSF118290	8.89E-27	9	72	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	11	71	IPR003657	WRKY domain
Pfam	PF03106	3.1E-26	13	70	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MNSRSSGEVV PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS KGCSARKQVE RSRTDPNMLV 60 ITYTSEHNHP WPTQRNALAG STRSSSSSSS NPSSRSSTAI ATATTSASSR VSQNKDEQNK 120 SHLASSSTPP SPYVAAAVKE EGIEERQEKM ELDNDVDDTY RPEFQHQPED FFADLDELEE 180 DSLNMLLSQE FSGDNSHGGN LENKTTIPDV FSDFFDDSSS RSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	3e-25	13	73	18	80	Disease resistance protein RRS1
5w3x_D	3e-25	13	73	18	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676779768

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ012167	0.0	FJ012167.1 Brassica napus WRKY35 transcription factor (WRKY35) mRNA, complete cds.
GenBank	KC246578	0.0	KC246578.1 Brassica napus WRKY transcription factor 35.1 (WRKY35.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018439076.1	1e-125	PREDICTED: probable WRKY transcription factor 35
Swissprot	O64747	1e-102	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	A0A078JV98	1e-124	A0A078JV98_BRANA; BnaAnng30430D protein (Fragment)
TrEMBL	A0A397ZHK1	1e-122	A0A397ZHK1_BRACM; Uncharacterized protein
STRING	Bra005388.1-P	1e-122	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3085	28	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	2e-83	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]