PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676780712
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 251aa    MW: 29011.4 Da    PI: 10.2003
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676780712genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.1e-151964147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed+ l ++v q+G+++W+ Ia+++  gR++k+c++rw++ 
        676780712 19 RGHWRPIEDDNLRKLVDQYGPKNWNFIAQHLY-GRSGKSCRLRWYNQ 64
                     899****************************9.************96 PP
2Myb_DNA-binding55.41.4e-1771114146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++++T+eE+e+l++a++  G++ W++Iar ++ gRt++ +k++++ 
        676780712  71 KKPFTEEEEERLLKAHQIQGNR-WASIARLFP-GRTDNAVKNHFHV 114
                      689*******************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7421465IPR017930Myb domain
SuperFamilySSF466891.19E-2817112IPR009057Homeodomain-like
SMARTSM007174.9E-131867IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-252072IPR009057Homeodomain-like
CDDcd001674.42E-122263No hitNo description
PfamPF139216.2E-162282No hitNo description
PROSITE profilePS5129422.79566120IPR017930Myb domain
SMARTSM007171.7E-1470118IPR001005SANT/Myb domain
CDDcd001671.00E-1073113No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2073118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEMSRGSNSF DNKKISCPRG HWRPIEDDNL RKLVDQYGPK NWNFIAQHLY GRSGKSCRLR  60
WYNQLDPNIT KKPFTEEEEE RLLKAHQIQG NRWASIARLF PGRTDNAVKN HFHVIMARRK  120
RESFSSTATS TFNQNWHTIL NSSSSLTRLH TSQFGLWRYQ KDKSRGLWPY TLVSATRDDQ  180
FGSSSISNVH KEIYPERRKL KELVDHHHDA FHSARPDHEK SSSGEDGPSI GDDGGKKNVT  240
FIDFLGVGLV S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-33191194104C-Myb DNA-Binding Domain
1msf_C2e-33191194104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676780712
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867181.11e-154transcription factor MYB3R-3
TrEMBLA0A1J3INR51e-158A0A1J3INR5_NOCCA; Transcription factor MYB44 (Fragment)
STRINGBostr.7867s1191.1.p1e-157(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.11e-156myb domain protein 69