PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676780836
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GATA
Protein Properties Length: 262aa    MW: 29713.2 Da    PI: 6.6054
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676780836genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.6e-18153187135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  676780836 153 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 187
                99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-17147197IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.438147183IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-16149211No hitNo description
Gene3DG3DSA:3.30.50.101.8E-14151185IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.63E-15152199No hitNo description
PfamPF003208.6E-16153187IPR000679Zinc finger, GATA-type
PROSITE patternPS003440153178IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEQEQQLTPE LFLVAGNADS FVVDDLLDFS NDNGQAELEW LSNFVEESFS KEDQDKLQLL  60
SGFKTPQTHH IKPEPEPELD QIFIPTDTDT DDSNVSVPAK ARSKRSRSAA STWASRLLAL  120
AGSDEPGPKK KQLRIKEHDS AGDIDREGGE RRCLHCATDK TPQWRTGPMG PKTLCNACGV  180
RYKSGRLVPE YRPASSPTFV MARHSNSHRK VMELRRQKEM RDDHLVTRPR SEKLLVDIRS  240
NGDDFLIRNN NNHVAPDFRH LI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676780836
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013669739.11e-150GATA transcription factor 9-like
SwissprotO826321e-139GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A398ALJ81e-147A0A398ALJ8_BRACM; GATA transcription factor
TrEMBLM4D4I91e-147M4D4I9_BRARP; GATA transcription factor
STRINGBra011393.1-P1e-147(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-119GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]