PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676780856
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GATA
Protein Properties Length: 270aa    MW: 30730.3 Da    PI: 5.0588
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676780856genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.95.9e-18179212134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                Cs+Cgt +Tp+WR gp g+ktLCnaCG+++++ +
  676780856 179 CSHCGTNTTPQWRTGPLGPKTLCNACGVRFKSGR 212
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.3E-836269IPR016679Transcription factor, GATA, plant
SMARTSM004011.5E-15173223IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-14176236No hitNo description
PROSITE profilePS5011412.084177209IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.2E-14177210IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.58E-15178235No hitNo description
PfamPF003201.3E-15179213IPR000679Zinc finger, GATA-type
PROSITE patternPS003440179204IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MELWTEARAL KASLRGEAIK HQVIVSEDLS RTSSAEDFSV ECFLDFSEEV QEEEEEEELV  60
SVTSSQEEQE QDCCIFSSQP CLFDQLPSLP DEDVEELEWV SRVVDDCSSP EVSLLFTQTH  120
KTKPSFSSRI PVKPRTKRPR NSLTGDRVWP LVSTNQHARG EQQWRKKKQE PAVVFQRRCS  180
HCGTNTTPQW RTGPLGPKTL CNACGVRFKS GRLCPEYRPA DSPTFSNEIH SNLHRKVLEL  240
RKSKELGEET GEATTKLEQV KFGSEVVEKT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676780856
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527710.0AK352771.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-P20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108711.11e-172PREDICTED: GATA transcription factor 3-like
RefseqXP_009108712.11e-172PREDICTED: GATA transcription factor 3-like
SwissprotQ8L4M61e-147GATA3_ARATH; GATA transcription factor 3
TrEMBLM4F0P91e-170M4F0P9_BRARP; GATA transcription factor
STRINGBra034644.1-P1e-171(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.21e-146GATA transcription factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]