PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676780896
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TALE
Protein Properties Length: 501aa    MW: 56015.2 Da    PI: 5.7751
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676780896genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.31.3e-083373741954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+ +++  LA+++gL+  qV++WF N R +
  676780896 337 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 374
                664459******************************88 PP
2BELL127.35.5e-41204275172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                erqe+q+k +kLls+l+eVd+rYkqy++q+q v+ssF+++ag+g+akpYt+lAl++iSrhFr+L+dai++qi
  676780896 204 ERQEMQSKLTKLLSMLDEVDRRYKQYHQQMQLVVSSFDVIAGYGAAKPYTALALQTISRHFRSLRDAISGQI 275
                79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.9E-73139273IPR006563POX domain
PfamPF075264.4E-48145272IPR006563POX domain
PROSITE profilePS5007111.758315378IPR001356Homeobox domain
SMARTSM003891.0E-8318382IPR001356Homeobox domain
CDDcd000863.74E-11318379No hitNo description
SuperFamilySSF466891.41E-16319384IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-26321383IPR009057Homeodomain-like
PfamPF059209.4E-18335374IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MENYPETQFL PGNAMIHMNP TVSYSEELAG RERTEANNVS PSQERQVFSR FGGMSQMQDI  60
QDFGPWRDQA SERNGFQLMN AMAGATGVLQ TGQGLSLSLG SQILPGTHQM SHQSVVPRAE  120
HLRGNEYATQ SFPGGNQNLD VVRTIPNSKY LNAAQQLLDE AVNVRKALKQ FQPEGDKNNE  180
NPHEPDQNPQ DSSTNPPAEI SQSERQEMQS KLTKLLSMLD EVDRRYKQYH QQMQLVVSSF  240
DVIAGYGAAK PYTALALQTI SRHFRSLRDA ISGQILVTRK CLGEQDGSDG NRIGTISRLK  300
YVDQHLRQQR GFVQPQAWRP QRGLPENSVL ILRAWLFEHF LHPYPKDSDK IMLARQTGLS  360
RGQVSNWFIN ARVRLWKPMV EEIYKEEFTE NDSNSSSENT PKMSEIGPVV ADDEDRAQEF  420
PQDRTEPDHG RGYGEETCGM VQGGQMDGRG FMTVEPTYHV AEMSRFGGGG GVSLTLGLQN  480
SQGHANVVAM SSSEAYNSFP G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14324382563Homeobox protein Meis2
3k2a_B1e-14324382563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676780896
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531440.0AK353144.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-H08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412205.10.0BEL1-like homeodomain protein 6 isoform X1
SwissprotO656850.0BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLV4MLP30.0V4MLP3_EUTSA; Uncharacterized protein
STRINGXP_006412205.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.20.0BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]