PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676781130
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 259aa    MW: 29759.3 Da    PI: 9.5834
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676781130genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.12.3e-161161611156
                HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                q+ +Le+ Fe+++++  e++  LAkklgL++rqV vWFqNr+a+ k
  676781130 116 QVSQLETSFEEENKLEPERKIVLAKKLGLPQRQVAVWFQNRKARCK 161
                899*****************************************98 PP
2HD-ZIP_I/II105.25.2e-341161971091
  HD-ZIP_I/II  10 qvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  qv++LE+sFeee+kLeperK  la++Lgl +rqvavWFqnr+AR k k++E+dy+ Lk++yd+l +++e++ +e+e+L++++
    676781130 116 QVSQLETSFEEENKLEPERKIVLAKKLGLPQRQVAVWFQNRKARCKIKKIERDYDILKACYDSLLAKHESVISENEKLKSKV 197
                  99*****************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.1E-12107167IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-16116170IPR009057Homeodomain-like
CDDcd000863.67E-12116164No hitNo description
SuperFamilySSF466891.37E-14116172IPR009057Homeodomain-like
PfamPF000461.3E-13116161IPR001356Homeobox domain
PROSITE profilePS5007114.22116163IPR001356Homeobox domain
PRINTSPR000317.5E-5134143IPR000047Helix-turn-helix motif
PROSITE patternPS000270138161IPR017970Homeobox, conserved site
PRINTSPR000317.5E-5143159IPR000047Helix-turn-helix motif
PfamPF021834.4E-15163204IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MADIPPLDLV DIRIEPSLIQ KSNNPAQFNP SPTSVFYFLS PYANQPPITI KKASHKKTTS  60
PFEVLVLSFQ GAKLAMEMKE TSTGEIDNQP PEKKRRLTIE QVKYIYKEIQ RSLLLQVSQL  120
ETSFEEENKL EPERKIVLAK KLGLPQRQVA VWFQNRKARC KIKKIERDYD ILKACYDSLL  180
AKHESVISEN EKLKSKVLTL TEKLLPATNQ THRIFQDKLN SKGDETMSSS TALVPLANDD  240
YLTNIDQSFG WWVWPPNLK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676781130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325481e-91AC232548.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010J09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590148.13e-91PREDICTED: homeobox-leucine zipper protein HAT5-like
RefseqXP_013700742.13e-91homeobox-leucine zipper protein HAT5-like
RefseqXP_013700743.13e-91homeobox-leucine zipper protein HAT5-like
TrEMBLA0A1J3EYU01e-100A0A1J3EYU0_NOCCA; Homeobox-leucine zipper protein HAT5
STRINGA0A087GTD27e-92(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM163821113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-40homeobox 1