PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676781398
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 306aa    MW: 34228.5 Da    PI: 9.1719
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676781398genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000443961123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y C+ C + F++   L  H+++H
  676781398 39 YACSFCRREFRSAQALGGHMNVH 61
               89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.74E-63665No hitNo description
PROSITE profilePS5015711.1773966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEKPGGVWIP KKNKKESSWE ELAFAEDDAA GSLWPPRSYA CSFCRREFRS AQALGGHMNV  60
HRRDRARLKQ SDDQYLFSKS SSPPEYPSHK YSDDIRETSC YTLVFNSSPN RFKSQQSCVV  120
DLSSPPSSLP YSTPSRVSSC LPRKQDTSSP SPSFVVETSN NYKKMISSSP WPSPGTFVEN  180
KGCDLYEVPV MEGSKKRKIE RGVPKNGDKA KVNLGKTTDL SVRMNLVIHQ GFPITAQGAD  240
DEEVGRGEIL KRRRMRESSS QPSIFISSLS CKSAIVTKNE EIKHKGDHFE DLDLELRLGA  300
DPPKGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-123461229superman protein
2l1o_A1e-123461229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676781398
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410965.11e-177zinc finger protein 10
SwissprotO809421e-155ZFP10_ARATH; Zinc finger protein 10
TrEMBLV4MIL61e-176V4MIL6_EUTSA; Uncharacterized protein
STRINGXP_006410965.11e-177(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110472534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-144zinc-finger protein 10