PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676781748
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 396aa    MW: 45310.9 Da    PI: 5.1851
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676781748genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM137.77.1e-43281562128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlskkge 98 
                +pGfrF+P+deel+++yLk+kv+gk++   ++i+evd+y+++P++L+  +++k+++++w+fF++ +kky +  +r +r+tk+g W++tg+ +e+++++++
  676781748  28 APGFRFEPSDEELISYYLKRKVQGKPMVP-NAIAEVDVYEHDPSELEelSRLKTKDQRWFFFCTPEKKYGNtCQRIKRTTKAGSWRKTGNPREIKRADDQ 126
                69************************888.89**************8444899999*************9647899************************ PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                l+g  ++ vf++grapkg++t+Wv+hey+l
  676781748 127 LIGNVNSYVFHRGRAPKGKRTNWVLHEYHL 156
                ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-4719174IPR003441NAC domain
PROSITE profilePS5100548.67427174IPR003441NAC domain
PfamPF023653.0E-2129156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MADRALPASE AGPAAETGNY ATRGTVIAPG FRFEPSDEEL ISYYLKRKVQ GKPMVPNAIA  60
EVDVYEHDPS ELEELSRLKT KDQRWFFFCT PEKKYGNTCQ RIKRTTKAGS WRKTGNPREI  120
KRADDQLIGN VNSYVFHRGR APKGKRTNWV LHEYHLIENE VEINSYVLCK VFHKINVGKP  180
TGYIHAPFSE QDWDDDGDNV GKAPVPSFLH ANRIKQKIQQ ENPLPSKDLI DLNELFREFD  240
MNENPKTVDQ DDNNDEPVTR ERLPLCGLNK EASLPLIQYK RKRQIDSLGS YDNPSQTTQD  300
HSPFPAKTGD IISSVAAMME EEEPEPLATI VPPISSTELI NDPQKEKQQM AVETETSKLE  360
IMEAQMMIYY LREKIDALRE ENEELKKINS NEGQRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-292717417165NO APICAL MERISTEM PROTEIN
1ut4_B9e-292717417165NO APICAL MERISTEM PROTEIN
1ut7_A9e-292717417165NO APICAL MERISTEM PROTEIN
1ut7_B9e-292717417165NO APICAL MERISTEM PROTEIN
3swm_A8e-292717420168NAC domain-containing protein 19
3swm_B8e-292717420168NAC domain-containing protein 19
3swm_C8e-292717420168NAC domain-containing protein 19
3swm_D8e-292717420168NAC domain-containing protein 19
3swp_A8e-292717420168NAC domain-containing protein 19
3swp_B8e-292717420168NAC domain-containing protein 19
3swp_C8e-292717420168NAC domain-containing protein 19
3swp_D8e-292717420168NAC domain-containing protein 19
4dul_A9e-292717417165NAC domain-containing protein 19
4dul_B9e-292717417165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676781748
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399623.11e-135NAC domain containing protein 50
TrEMBLV4N6991e-133V4N699_EUTSA; Uncharacterized protein
STRINGXP_006399623.11e-134(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1873667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.25e-97NAC domain containing protein 50