PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676781944
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 438aa    MW: 49968.2 Da    PI: 5.9557
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676781944genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.17.2e-161149341
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
               i +k+ r  tf kR++g+lKKA EL +LC++ev+ +++ 
  676781944 11 IADKTARRSTFRKRKKGLLKKADELATLCGVEVCAVVAN 49
               889*******************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-17161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.465161IPR002100Transcription factor, MADS-box
CDDcd002665.41E-15284No hitNo description
SuperFamilySSF554553.01E-21397IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-7323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-171150IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAKNKVKLSL IADKTARRST FRKRKKGLLK KADELATLCG VEVCAVVAND QDDQNPEAWP  60
SKEGVQEVYS KFMELTEDER GRKRYDQCAY MEDRIKKEED KLRRTRVENR EIEMKELMFD  120
LLKGKKTMDP RLHDPSVFKD LGSFIDQYLN QINYRIHNLN GSGQSSSLSP VDVAAVDAPH  180
PAVGDVNPAA VSDVAAVTTP PPGFADHILP YHNGNTNVNQ QAPPSFNDYI QYQNMIQQQA  240
PPSFNDHIQY QNMNQQAPPS FNDHIHFNDH VQYQNMNQQA PPSFNDHVQY QNMNQQELAQ  300
YQVPTYFSDH HAQYQNMNHQ EQFQYQKPVS TVYDQIRKIY YASNKDVTSD LGESSNQDPN  360
QLMAQPPPQM SHVQELANAD SMDGNYYRYH QLPTTSHIPS TTTTTTTTTT DLSATTTTTD  420
LSAPNTNNNP WPTRFGLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676781944
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14795620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.12e-47AGAMOUS-like 92